Cargando…

Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems

Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled symbionts that are often detected in groundwater. The effects of groundwater geochemistry on the abundance, distribution, taxonomic diversity and host association of CPR bacteria and DPANN archaea has not been st...

Descripción completa

Detalles Bibliográficos
Autores principales:	He, Christine, Keren, Ray, Whittaker, Michael L., Farag, Ibrahim F., Doudna, Jennifer A., Cate, Jamie H. D., Banfield, Jillian F.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2021
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906910/ https://www.ncbi.nlm.nih.gov/pubmed/33495623 http://dx.doi.org/10.1038/s41564-020-00840-5

Ejemplares similares

Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea
por: Castelle, Cindy J., et al.
Publicado: (2021)

Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea
por: Jaffe, Alexander L, et al.
Publicado: (2019)

Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
por: Dombrowski, Nina, et al.
Publicado: (2019)

Metagenomic Insights into the Metabolic and Ecological Functions of Abundant Deep-Sea Hydrothermal Vent DPANN Archaea
por: Cai, Ruining, et al.
Publicado: (2021)

Insight into the symbiotic lifestyle of DPANN archaea revealed by cultivation and genome analyses
por: Sakai, Hiroyuki D., et al.
Publicado: (2022)

Genomic evidence of functional diversity in DPANN archaea, from oxic species to anoxic vampiristic consortia
por: Vigneron, Adrien, et al.
Publicado: (2022)

Rich Repertoire of Quorum Sensing Protein Coding Sequences in CPR and DPANN Associated with Interspecies and Interkingdom Communication
por: Bernard, Charles, et al.
Publicado: (2020)

Uncultivated DPANN archaea are ubiquitous inhabitants of global oxygen deficient zones with diverse metabolic potential
por: Zhang, Irene H., et al.
Publicado: (2023)

Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome
por: Nissley, Amos J, et al.
Publicado: (2023)

Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN
por: Beam, Jacob P., et al.
Publicado: (2020)

Strain-Level Variation and Diverse Host Bacterial Responses in Episymbiotic Saccharibacteria
por: Nie, Jie, et al.
Publicado: (2022)

Type IV pili trigger episymbiotic association of Saccharibacteria with its bacterial host
por: Xie, Bingliang, et al.
Publicado: (2022)

Episymbiotic bacterium induces intracellular lipid droplet production in its host bacteria
por: Dong, Pu-Ting, et al.
Publicado: (2023)

The distinction of CPR bacteria from other bacteria based on protein family content
por: Méheust, Raphaël, et al.
Publicado: (2019)

Using strain-resolved analysis to identify contamination in metagenomics data
por: Lou, Yue Clare, et al.
Publicado: (2023)

Evolutionary Strategies of Viruses, Bacteria and Archaea in Hydrothermal Vent Ecosystems Revealed through Metagenomics
por: Anderson, Rika E., et al.
Publicado: (2014)

Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture
por: Gushgari-Doyle, Sara, et al.
Publicado: (2021)

Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on archaeal evolution
por: Dombrowski, Nina, et al.
Publicado: (2020)

Comparative Genomics Provides Insights into the Genetic Diversity and Evolution of the DPANN Superphylum
por: Li, Liangzhi, et al.
Publicado: (2021)

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms
por: Olm, Matthew R., et al.
Publicado: (2019)

Metabolism Interactions Promote the Overall Functioning of the Episymbiotic Chemosynthetic Community of Shinkaia crosnieri of Cold Seeps
por: Xu, Zheng, et al.
Publicado: (2022)

Genome-Resolved Metagenomic Insights into Massive Seasonal Ammonia-Oxidizing Archaea Blooms in San Francisco Bay
por: Rasmussen, Anna N., et al.
Publicado: (2022)

The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers
por: Chaudhari, Narendrakumar M., et al.
Publicado: (2021)

Genome‐resolved metagenomics of a bioremediation system for degradation of thiocyanate in mine water containing suspended solid tailings
por: Rahman, Sumayah F., et al.
Publicado: (2017)

Stable isotope informed genome-resolved metagenomics reveals that Saccharibacteria utilize microbially-processed plant-derived carbon
por: Starr, Evan P., et al.
Publicado: (2018)

Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities
por: Arbour, Tyler J., et al.
Publicado: (2020)

The Archaeome’s Role in Colorectal Cancer: Unveiling the DPANN Group and Investigating Archaeal Functional Signatures
por: Mathlouthi, Nour El Houda, et al.
Publicado: (2023)

Metatranscriptomics by In Situ RNA Stabilization Directly and Comprehensively Revealed Episymbiotic Microbial Communities of Deep-Sea Squat Lobsters
por: Motoki, Kaori, et al.
Publicado: (2020)

Mapping Groundwater Dependent Ecosystems in California
por: Howard, Jeanette, et al.
Publicado: (2010)

Using Boreholes as Windows into Groundwater Ecosystems
por: Sorensen, James P. R., et al.
Publicado: (2013)

Managing Groundwater to Ensure Ecosystem Function
por: Saito, Laurel, et al.
Publicado: (2021)

Archaea and their interactions with bacteria in a karst ecosystem
por: Cheng, Xiaoyu, et al.
Publicado: (2023)

Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil
por: Starr, Evan P., et al.
Publicado: (2021)

Microbial Community Composition of the Antarctic Ecosystems: Review of the Bacteria, Fungi, and Archaea Identified through an NGS-Based Metagenomics Approach
por: Doytchinov, Vesselin V., et al.
Publicado: (2022)

Microbial Community Structure and the Persistence of Cyanobacterial Populations in Salt Crusts of the Hyperarid Atacama Desert from Genome-Resolved Metagenomics
por: Finstad, Kari M., et al.
Publicado: (2017)

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs
por: Hu, Ping, et al.
Publicado: (2016)

A widespread group of large plasmids in methanotrophic Methanoperedens archaea
por: Schoelmerich, Marie C., et al.
Publicado: (2022)

From rags to enriched: metagenomic insights into ammonia‐oxidizing archaea following ammonia enrichment of a denuded oligotrophic soil ecosystem
por: Vuong, Paton, et al.
Publicado: (2022)

Stygofauna enhance prokaryotic transport in groundwater ecosystems
por: Smith, Renee J., et al.
Publicado: (2016)

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2’-fucosyllactose utilization can be facilitated by coexisting species
por: Lou, Yue Clare, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_4h2j909tvj53mgsjog3mf2b2pm