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Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images
This study proposes a novel computer assisted diagnostic (CAD) system for early diagnosis of diabetic retinopathy (DR) using optical coherence tomography (OCT) B-scans. The CAD system is based on fusing novel OCT markers that describe both the morphology/anatomy and the reflectivity of retinal layer...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907116/ https://www.ncbi.nlm.nih.gov/pubmed/33633139 http://dx.doi.org/10.1038/s41598-021-83735-7 |
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author | Sharafeldeen, A. Elsharkawy, M. Khalifa, F. Soliman, A. Ghazal, M. AlHalabi, M. Yaghi, M. Alrahmawy, M. Elmougy, S. Sandhu, H. S. El-Baz, A. |
author_facet | Sharafeldeen, A. Elsharkawy, M. Khalifa, F. Soliman, A. Ghazal, M. AlHalabi, M. Yaghi, M. Alrahmawy, M. Elmougy, S. Sandhu, H. S. El-Baz, A. |
author_sort | Sharafeldeen, A. |
collection | PubMed |
description | This study proposes a novel computer assisted diagnostic (CAD) system for early diagnosis of diabetic retinopathy (DR) using optical coherence tomography (OCT) B-scans. The CAD system is based on fusing novel OCT markers that describe both the morphology/anatomy and the reflectivity of retinal layers to improve DR diagnosis. This system separates retinal layers automatically using a segmentation approach based on an adaptive appearance and their prior shape information. High-order morphological and novel reflectivity markers are extracted from individual segmented layers. Namely, the morphological markers are layer thickness and tortuosity while the reflectivity markers are the 1st-order reflectivity of the layer in addition to local and global high-order reflectivity based on Markov-Gibbs random field (MGRF) and gray-level co-occurrence matrix (GLCM), respectively. The extracted image-derived markers are represented using cumulative distribution function (CDF) descriptors. The constructed CDFs are then described using their statistical measures, i.e., the 10th through 90th percentiles with a 10% increment. For individual layer classification, each extracted descriptor of a given layer is fed to a support vector machine (SVM) classifier with a linear kernel. The results of the four classifiers are then fused using a backpropagation neural network (BNN) to diagnose each retinal layer. For global subject diagnosis, classification outputs (probabilities) of the twelve layers are fused using another BNN to make the final diagnosis of the B-scan. This system is validated and tested on 130 patients, with two scans for both eyes (i.e. 260 OCT images), with a balanced number of normal and DR subjects using different validation metrics: 2-folds, 4-folds, 10-folds, and leave-one-subject-out (LOSO) cross-validation approaches. The performance of the proposed system was evaluated using sensitivity, specificity, F1-score, and accuracy metrics. The system’s performance after the fusion of these different markers showed better performance compared with individual markers and other machine learning fusion methods. Namely, it achieved [Formula: see text] , [Formula: see text] , [Formula: see text] , and [Formula: see text] , respectively, using the LOSO cross-validation technique. The reported results, based on the integration of morphology and reflectivity markers and by using state-of-the-art machine learning classifications, demonstrate the ability of the proposed system to diagnose the DR early. |
format | Online Article Text |
id | pubmed-7907116 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79071162021-02-26 Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images Sharafeldeen, A. Elsharkawy, M. Khalifa, F. Soliman, A. Ghazal, M. AlHalabi, M. Yaghi, M. Alrahmawy, M. Elmougy, S. Sandhu, H. S. El-Baz, A. Sci Rep Article This study proposes a novel computer assisted diagnostic (CAD) system for early diagnosis of diabetic retinopathy (DR) using optical coherence tomography (OCT) B-scans. The CAD system is based on fusing novel OCT markers that describe both the morphology/anatomy and the reflectivity of retinal layers to improve DR diagnosis. This system separates retinal layers automatically using a segmentation approach based on an adaptive appearance and their prior shape information. High-order morphological and novel reflectivity markers are extracted from individual segmented layers. Namely, the morphological markers are layer thickness and tortuosity while the reflectivity markers are the 1st-order reflectivity of the layer in addition to local and global high-order reflectivity based on Markov-Gibbs random field (MGRF) and gray-level co-occurrence matrix (GLCM), respectively. The extracted image-derived markers are represented using cumulative distribution function (CDF) descriptors. The constructed CDFs are then described using their statistical measures, i.e., the 10th through 90th percentiles with a 10% increment. For individual layer classification, each extracted descriptor of a given layer is fed to a support vector machine (SVM) classifier with a linear kernel. The results of the four classifiers are then fused using a backpropagation neural network (BNN) to diagnose each retinal layer. For global subject diagnosis, classification outputs (probabilities) of the twelve layers are fused using another BNN to make the final diagnosis of the B-scan. This system is validated and tested on 130 patients, with two scans for both eyes (i.e. 260 OCT images), with a balanced number of normal and DR subjects using different validation metrics: 2-folds, 4-folds, 10-folds, and leave-one-subject-out (LOSO) cross-validation approaches. The performance of the proposed system was evaluated using sensitivity, specificity, F1-score, and accuracy metrics. The system’s performance after the fusion of these different markers showed better performance compared with individual markers and other machine learning fusion methods. Namely, it achieved [Formula: see text] , [Formula: see text] , [Formula: see text] , and [Formula: see text] , respectively, using the LOSO cross-validation technique. The reported results, based on the integration of morphology and reflectivity markers and by using state-of-the-art machine learning classifications, demonstrate the ability of the proposed system to diagnose the DR early. Nature Publishing Group UK 2021-02-25 /pmc/articles/PMC7907116/ /pubmed/33633139 http://dx.doi.org/10.1038/s41598-021-83735-7 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Sharafeldeen, A. Elsharkawy, M. Khalifa, F. Soliman, A. Ghazal, M. AlHalabi, M. Yaghi, M. Alrahmawy, M. Elmougy, S. Sandhu, H. S. El-Baz, A. Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title | Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title_full | Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title_fullStr | Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title_full_unstemmed | Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title_short | Precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using OCT images |
title_sort | precise higher-order reflectivity and morphology models for early diagnosis of diabetic retinopathy using oct images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907116/ https://www.ncbi.nlm.nih.gov/pubmed/33633139 http://dx.doi.org/10.1038/s41598-021-83735-7 |
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