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A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer

This study presents a non-invasive, automated, clinical diagnostic system for early diagnosis of lung cancer that integrates imaging data from a single computed tomography scan and breath bio-markers obtained from a single exhaled breath to quickly and accurately classify lung nodules. CT imaging an...

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Autores principales: Shaffie, Ahmed, Soliman, Ahmed, Fu, Xiao-An, Nantz, Michael, Giridharan, Guruprasad, van Berkel, Victor, Khalifeh, Hadil Abu, Ghazal, Mohammed, Elmaghraby, Adel, El-baz, Ayman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907202/
https://www.ncbi.nlm.nih.gov/pubmed/33633213
http://dx.doi.org/10.1038/s41598-021-83907-5
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author Shaffie, Ahmed
Soliman, Ahmed
Fu, Xiao-An
Nantz, Michael
Giridharan, Guruprasad
van Berkel, Victor
Khalifeh, Hadil Abu
Ghazal, Mohammed
Elmaghraby, Adel
El-baz, Ayman
author_facet Shaffie, Ahmed
Soliman, Ahmed
Fu, Xiao-An
Nantz, Michael
Giridharan, Guruprasad
van Berkel, Victor
Khalifeh, Hadil Abu
Ghazal, Mohammed
Elmaghraby, Adel
El-baz, Ayman
author_sort Shaffie, Ahmed
collection PubMed
description This study presents a non-invasive, automated, clinical diagnostic system for early diagnosis of lung cancer that integrates imaging data from a single computed tomography scan and breath bio-markers obtained from a single exhaled breath to quickly and accurately classify lung nodules. CT imaging and breath volatile organic compounds data were collected from 47 patients. Spherical Harmonics-based shape features to quantify the shape complexity of the pulmonary nodules, 7th-Order Markov Gibbs Random Field based appearance model to describe the spatial non-homogeneities in the pulmonary nodule, and volumetric features (size) of pulmonary nodules were calculated from CT images. 27 VOCs in exhaled breath were captured by a micro-reactor approach and quantied using mass spectrometry. CT and breath markers were input into a deep-learning autoencoder classifier with a leave-one-subject-out cross validation for nodule classification. To mitigate the limitation of a small sample size and validate the methodology for individual markers, retrospective CT scans from 467 patients with 727 pulmonary nodules, and breath samples from 504 patients were analyzed. The CAD system achieved 97.8% accuracy, 97.3% sensitivity, 100% specificity, and 99.1% area under curve in classifying pulmonary nodules.
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spelling pubmed-79072022021-02-26 A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer Shaffie, Ahmed Soliman, Ahmed Fu, Xiao-An Nantz, Michael Giridharan, Guruprasad van Berkel, Victor Khalifeh, Hadil Abu Ghazal, Mohammed Elmaghraby, Adel El-baz, Ayman Sci Rep Article This study presents a non-invasive, automated, clinical diagnostic system for early diagnosis of lung cancer that integrates imaging data from a single computed tomography scan and breath bio-markers obtained from a single exhaled breath to quickly and accurately classify lung nodules. CT imaging and breath volatile organic compounds data were collected from 47 patients. Spherical Harmonics-based shape features to quantify the shape complexity of the pulmonary nodules, 7th-Order Markov Gibbs Random Field based appearance model to describe the spatial non-homogeneities in the pulmonary nodule, and volumetric features (size) of pulmonary nodules were calculated from CT images. 27 VOCs in exhaled breath were captured by a micro-reactor approach and quantied using mass spectrometry. CT and breath markers were input into a deep-learning autoencoder classifier with a leave-one-subject-out cross validation for nodule classification. To mitigate the limitation of a small sample size and validate the methodology for individual markers, retrospective CT scans from 467 patients with 727 pulmonary nodules, and breath samples from 504 patients were analyzed. The CAD system achieved 97.8% accuracy, 97.3% sensitivity, 100% specificity, and 99.1% area under curve in classifying pulmonary nodules. Nature Publishing Group UK 2021-02-25 /pmc/articles/PMC7907202/ /pubmed/33633213 http://dx.doi.org/10.1038/s41598-021-83907-5 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Shaffie, Ahmed
Soliman, Ahmed
Fu, Xiao-An
Nantz, Michael
Giridharan, Guruprasad
van Berkel, Victor
Khalifeh, Hadil Abu
Ghazal, Mohammed
Elmaghraby, Adel
El-baz, Ayman
A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title_full A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title_fullStr A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title_full_unstemmed A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title_short A novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
title_sort novel technology to integrate imaging and clinical markers for non-invasive diagnosis of lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907202/
https://www.ncbi.nlm.nih.gov/pubmed/33633213
http://dx.doi.org/10.1038/s41598-021-83907-5
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