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Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands
Simulation of conformationally complicated molecules requires multiple levels of theory to obtain accurate thermodynamics, requiring significant researcher time to implement. We automate this workflow using all open-source code (XTBDFT) and apply it toward a practical challenge: diphosphinoamine (PN...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907204/ https://www.ncbi.nlm.nih.gov/pubmed/33633152 http://dx.doi.org/10.1038/s41598-021-82816-x |
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author | Lin, Sibo Fromer, Jenna C. Ghosh, Yagnaseni Hanna, Brian Elanany, Mohamed Xu, Wei |
author_facet | Lin, Sibo Fromer, Jenna C. Ghosh, Yagnaseni Hanna, Brian Elanany, Mohamed Xu, Wei |
author_sort | Lin, Sibo |
collection | PubMed |
description | Simulation of conformationally complicated molecules requires multiple levels of theory to obtain accurate thermodynamics, requiring significant researcher time to implement. We automate this workflow using all open-source code (XTBDFT) and apply it toward a practical challenge: diphosphinoamine (PNP) ligands used for ethylene tetramerization catalysis may isomerize (with deleterious effects) to iminobisphosphines (PPNs), and a computational method to evaluate PNP ligand candidates would save significant experimental effort. We use XTBDFT to calculate the thermodynamic stability of a wide range of conformationally complex PNP ligands against isomeriation to PPN (ΔG(PPN)), and establish a strong correlation between ΔG(PPN) and catalyst performance. Finally, we apply our method to screen novel PNP candidates, saving significant time by ruling out candidates with non-trivial synthetic routes and poor expected catalytic performance. |
format | Online Article Text |
id | pubmed-7907204 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-79072042021-02-26 Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands Lin, Sibo Fromer, Jenna C. Ghosh, Yagnaseni Hanna, Brian Elanany, Mohamed Xu, Wei Sci Rep Article Simulation of conformationally complicated molecules requires multiple levels of theory to obtain accurate thermodynamics, requiring significant researcher time to implement. We automate this workflow using all open-source code (XTBDFT) and apply it toward a practical challenge: diphosphinoamine (PNP) ligands used for ethylene tetramerization catalysis may isomerize (with deleterious effects) to iminobisphosphines (PPNs), and a computational method to evaluate PNP ligand candidates would save significant experimental effort. We use XTBDFT to calculate the thermodynamic stability of a wide range of conformationally complex PNP ligands against isomeriation to PPN (ΔG(PPN)), and establish a strong correlation between ΔG(PPN) and catalyst performance. Finally, we apply our method to screen novel PNP candidates, saving significant time by ruling out candidates with non-trivial synthetic routes and poor expected catalytic performance. Nature Publishing Group UK 2021-02-25 /pmc/articles/PMC7907204/ /pubmed/33633152 http://dx.doi.org/10.1038/s41598-021-82816-x Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Lin, Sibo Fromer, Jenna C. Ghosh, Yagnaseni Hanna, Brian Elanany, Mohamed Xu, Wei Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title | Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title_full | Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title_fullStr | Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title_full_unstemmed | Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title_short | Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
title_sort | computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7907204/ https://www.ncbi.nlm.nih.gov/pubmed/33633152 http://dx.doi.org/10.1038/s41598-021-82816-x |
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