Cargando…
Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction
Shrimp fisheries are among the most important fisheries worldwide, and shrimp culture has increased considerably in recent years. Most current studies on reproduction-related genes have been conducted on cultured shrimp. However, gene expression is intimately linked to physiological and environmenta...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7908874/ https://www.ncbi.nlm.nih.gov/pubmed/33665004 http://dx.doi.org/10.7717/peerj.10694 |
_version_ | 1783655806981373952 |
---|---|
author | Montes-Dominguez, Araceli Lorena Avena-Soto, Jesus Arian Lizarraga-Rodriguez, Jorge Luis Perez-Gala, Rodrigo de Jesus Jimenez-Gutierrez, Stephanie Sotelo-Falomir, Jesus Alberto Pinzon-Miranda, Fernando Marino Martinez-Perez, Francisco Muñoz-Rubi, Horacio Alberto Chavez-Herrera, Dario Jimenez-Gutierrez, Laura Rebeca |
author_facet | Montes-Dominguez, Araceli Lorena Avena-Soto, Jesus Arian Lizarraga-Rodriguez, Jorge Luis Perez-Gala, Rodrigo de Jesus Jimenez-Gutierrez, Stephanie Sotelo-Falomir, Jesus Alberto Pinzon-Miranda, Fernando Marino Martinez-Perez, Francisco Muñoz-Rubi, Horacio Alberto Chavez-Herrera, Dario Jimenez-Gutierrez, Laura Rebeca |
author_sort | Montes-Dominguez, Araceli Lorena |
collection | PubMed |
description | Shrimp fisheries are among the most important fisheries worldwide, and shrimp culture has increased considerably in recent years. Most current studies on reproduction-related genes have been conducted on cultured shrimp. However, gene expression is intimately linked to physiological and environmental conditions, and therefore an organism’s growth environment has a great influence on reproduction. Thus, gene expression profiling, should be applied in fisheries studies. Here, we identified the expression patterns of 76 reproduction-related genes in P. vannamei via the analysis of pooled transcriptomes from a time-series experiment encompassing a full circadian cycle. The expression patterns of genes associated both directly (Vtg, ODP, and ProR) and indirectly (FAMet, CruA1, and CruC1) with reproduction were evaluated, as these genes could be used as molecular markers of previtellogenic and vitellogenic maturation stages. The evaluated genes were prominently upregulated during vitellogenic stages, with specific expression patterns depending on the organism’s environment, diet, and season. Vtg, ProR, ODP, and FaMet could serve as molecular markers for both wild and cultured organisms. |
format | Online Article Text |
id | pubmed-7908874 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79088742021-03-03 Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction Montes-Dominguez, Araceli Lorena Avena-Soto, Jesus Arian Lizarraga-Rodriguez, Jorge Luis Perez-Gala, Rodrigo de Jesus Jimenez-Gutierrez, Stephanie Sotelo-Falomir, Jesus Alberto Pinzon-Miranda, Fernando Marino Martinez-Perez, Francisco Muñoz-Rubi, Horacio Alberto Chavez-Herrera, Dario Jimenez-Gutierrez, Laura Rebeca PeerJ Aquaculture, Fisheries and Fish Science Shrimp fisheries are among the most important fisheries worldwide, and shrimp culture has increased considerably in recent years. Most current studies on reproduction-related genes have been conducted on cultured shrimp. However, gene expression is intimately linked to physiological and environmental conditions, and therefore an organism’s growth environment has a great influence on reproduction. Thus, gene expression profiling, should be applied in fisheries studies. Here, we identified the expression patterns of 76 reproduction-related genes in P. vannamei via the analysis of pooled transcriptomes from a time-series experiment encompassing a full circadian cycle. The expression patterns of genes associated both directly (Vtg, ODP, and ProR) and indirectly (FAMet, CruA1, and CruC1) with reproduction were evaluated, as these genes could be used as molecular markers of previtellogenic and vitellogenic maturation stages. The evaluated genes were prominently upregulated during vitellogenic stages, with specific expression patterns depending on the organism’s environment, diet, and season. Vtg, ProR, ODP, and FaMet could serve as molecular markers for both wild and cultured organisms. PeerJ Inc. 2021-02-23 /pmc/articles/PMC7908874/ /pubmed/33665004 http://dx.doi.org/10.7717/peerj.10694 Text en ©2021 Montes-Dominguez et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Aquaculture, Fisheries and Fish Science Montes-Dominguez, Araceli Lorena Avena-Soto, Jesus Arian Lizarraga-Rodriguez, Jorge Luis Perez-Gala, Rodrigo de Jesus Jimenez-Gutierrez, Stephanie Sotelo-Falomir, Jesus Alberto Pinzon-Miranda, Fernando Marino Martinez-Perez, Francisco Muñoz-Rubi, Horacio Alberto Chavez-Herrera, Dario Jimenez-Gutierrez, Laura Rebeca Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title | Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title_full | Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title_fullStr | Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title_full_unstemmed | Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title_short | Comparison between cultured and wild Pacific white shrimp (Penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
title_sort | comparison between cultured and wild pacific white shrimp (penaeus vannamei) vitellogenesis: next-generation sequencing and relative expression of genes directly and indirectly related to reproduction |
topic | Aquaculture, Fisheries and Fish Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7908874/ https://www.ncbi.nlm.nih.gov/pubmed/33665004 http://dx.doi.org/10.7717/peerj.10694 |
work_keys_str_mv | AT montesdominguezaracelilorena comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT avenasotojesusarian comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT lizarragarodriguezjorgeluis comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT perezgalarodrigodejesus comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT jimenezgutierrezstephanie comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT sotelofalomirjesusalberto comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT pinzonmirandafernandomarino comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT martinezperezfrancisco comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT munozrubihoracioalberto comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT chavezherreradario comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction AT jimenezgutierrezlaurarebeca comparisonbetweenculturedandwildpacificwhiteshrimppenaeusvannameivitellogenesisnextgenerationsequencingandrelativeexpressionofgenesdirectlyandindirectlyrelatedtoreproduction |