Cargando…

A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae

Carbohydrate rich substrates such as lignocellulosic hydrolysates remain one of the primary sources of potentially renewable fuel and bulk chemicals. The pentose sugar d-xylose is often present in significant amounts along with hexoses. Saccharomyces cerevisiae can acquire the ability to metabolize...

Descripción completa

Detalles Bibliográficos
Autores principales: Silva, Paulo César, Ceja-Navarro, Javier A., Azevedo, Flávio, Karaoz, Ulas, Brodie, Eoin L., Johansson, Björn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7910561/
https://www.ncbi.nlm.nih.gov/pubmed/33637780
http://dx.doi.org/10.1038/s41598-021-83937-z
_version_ 1783656144620748800
author Silva, Paulo César
Ceja-Navarro, Javier A.
Azevedo, Flávio
Karaoz, Ulas
Brodie, Eoin L.
Johansson, Björn
author_facet Silva, Paulo César
Ceja-Navarro, Javier A.
Azevedo, Flávio
Karaoz, Ulas
Brodie, Eoin L.
Johansson, Björn
author_sort Silva, Paulo César
collection PubMed
description Carbohydrate rich substrates such as lignocellulosic hydrolysates remain one of the primary sources of potentially renewable fuel and bulk chemicals. The pentose sugar d-xylose is often present in significant amounts along with hexoses. Saccharomyces cerevisiae can acquire the ability to metabolize d-xylose through expression of heterologous d-xylose isomerase (XI). This enzyme is notoriously difficult to express in S. cerevisiae and only fourteen XIs have been reported to be active so far. We cloned a new d-xylose isomerase derived from microorganisms in the gut of the wood-feeding beetle Odontotaenius disjunctus. Although somewhat homologous to the XI from Piromyces sp. E2, the new gene was identified as bacterial in origin and the host as a Parabacteroides sp. Expression of the new XI in S. cerevisiae resulted in faster aerobic growth than the XI from Piromyces on d-xylose media. The d-xylose isomerization rate conferred by the new XI was also 72% higher, while absolute xylitol production was identical in both strains. Interestingly, increasing concentrations of xylitol (up to 8 g L(−1)) appeared not to inhibit d-xylose consumption. The newly described XI displayed 2.6 times higher specific activity, 37% lower K(M) for d-xylose, and exhibited higher activity over a broader temperature range, retaining 51% of maximal activity at 30 °C compared with only 29% activity for the Piromyces XI.
format Online
Article
Text
id pubmed-7910561
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-79105612021-03-02 A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae Silva, Paulo César Ceja-Navarro, Javier A. Azevedo, Flávio Karaoz, Ulas Brodie, Eoin L. Johansson, Björn Sci Rep Article Carbohydrate rich substrates such as lignocellulosic hydrolysates remain one of the primary sources of potentially renewable fuel and bulk chemicals. The pentose sugar d-xylose is often present in significant amounts along with hexoses. Saccharomyces cerevisiae can acquire the ability to metabolize d-xylose through expression of heterologous d-xylose isomerase (XI). This enzyme is notoriously difficult to express in S. cerevisiae and only fourteen XIs have been reported to be active so far. We cloned a new d-xylose isomerase derived from microorganisms in the gut of the wood-feeding beetle Odontotaenius disjunctus. Although somewhat homologous to the XI from Piromyces sp. E2, the new gene was identified as bacterial in origin and the host as a Parabacteroides sp. Expression of the new XI in S. cerevisiae resulted in faster aerobic growth than the XI from Piromyces on d-xylose media. The d-xylose isomerization rate conferred by the new XI was also 72% higher, while absolute xylitol production was identical in both strains. Interestingly, increasing concentrations of xylitol (up to 8 g L(−1)) appeared not to inhibit d-xylose consumption. The newly described XI displayed 2.6 times higher specific activity, 37% lower K(M) for d-xylose, and exhibited higher activity over a broader temperature range, retaining 51% of maximal activity at 30 °C compared with only 29% activity for the Piromyces XI. Nature Publishing Group UK 2021-02-26 /pmc/articles/PMC7910561/ /pubmed/33637780 http://dx.doi.org/10.1038/s41598-021-83937-z Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Silva, Paulo César
Ceja-Navarro, Javier A.
Azevedo, Flávio
Karaoz, Ulas
Brodie, Eoin L.
Johansson, Björn
A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title_full A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title_fullStr A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title_full_unstemmed A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title_short A novel d-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae
title_sort novel d-xylose isomerase from the gut of the wood feeding beetle odontotaenius disjunctus efficiently expressed in saccharomyces cerevisiae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7910561/
https://www.ncbi.nlm.nih.gov/pubmed/33637780
http://dx.doi.org/10.1038/s41598-021-83937-z
work_keys_str_mv AT silvapaulocesar anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT cejanavarrojaviera anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT azevedoflavio anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT karaozulas anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT brodieeoinl anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT johanssonbjorn anoveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT silvapaulocesar noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT cejanavarrojaviera noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT azevedoflavio noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT karaozulas noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT brodieeoinl noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae
AT johanssonbjorn noveldxyloseisomerasefromthegutofthewoodfeedingbeetleodontotaeniusdisjunctusefficientlyexpressedinsaccharomycescerevisiae