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A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis

In recent years, trafficking and abuse of hallucinogenic mushrooms have become a serious social problem. It is therefore imperative to identify hallucinogenic mushrooms of the genus Psilocybe for national drug control legislation. An internal transcribed spacer (ITS) is a DNA barcoding tool utilized...

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Autores principales: Zhang, Xiaochun, Yu, Huan, Yang, Qi, Wang, Ziwei, Xia, Ruocheng, Chen, Chong, Qu, Yiling, Tan, Rui, Shi, Yan, Xiang, Ping, Zhang, Suhua, Li, Chengtao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911181/
https://www.ncbi.nlm.nih.gov/pubmed/33572950
http://dx.doi.org/10.3390/genes12020199
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author Zhang, Xiaochun
Yu, Huan
Yang, Qi
Wang, Ziwei
Xia, Ruocheng
Chen, Chong
Qu, Yiling
Tan, Rui
Shi, Yan
Xiang, Ping
Zhang, Suhua
Li, Chengtao
author_facet Zhang, Xiaochun
Yu, Huan
Yang, Qi
Wang, Ziwei
Xia, Ruocheng
Chen, Chong
Qu, Yiling
Tan, Rui
Shi, Yan
Xiang, Ping
Zhang, Suhua
Li, Chengtao
author_sort Zhang, Xiaochun
collection PubMed
description In recent years, trafficking and abuse of hallucinogenic mushrooms have become a serious social problem. It is therefore imperative to identify hallucinogenic mushrooms of the genus Psilocybe for national drug control legislation. An internal transcribed spacer (ITS) is a DNA barcoding tool utilized for species identification. Many methods have been used to discriminate the ITS region, but they are often limited by having a low resolution. In this study, we sought to analyze the ITS and its fragments, ITS1 and ITS2, by using high-resolution melting (HRM) analysis, which is a rapid and sensitive method for evaluating sequence variation within PCR amplicons. The ITS HRM assay was tested for specificity, reproducibility, sensitivity, and the capacity to analyze mixture samples. It was shown that the melting temperatures of the ITS, ITS1, and ITS2 of Psilocybe cubensis were 83.72 ± 0.01, 80.98 ± 0.06, and 83.46 ± 0.08 °C, and for other species, we also obtained species-specific results. Finally, we performed ITS sequencing to validate the presumptive taxonomic identity of our samples, and the sequencing output significantly supported our HRM data. Taken together, these results indicate that the HRM method can quickly distinguish the DNA barcoding of Psilocybe cubensis and other fungi, which can be utilized for drug trafficking cases and forensic science.
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spelling pubmed-79111812021-02-28 A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis Zhang, Xiaochun Yu, Huan Yang, Qi Wang, Ziwei Xia, Ruocheng Chen, Chong Qu, Yiling Tan, Rui Shi, Yan Xiang, Ping Zhang, Suhua Li, Chengtao Genes (Basel) Article In recent years, trafficking and abuse of hallucinogenic mushrooms have become a serious social problem. It is therefore imperative to identify hallucinogenic mushrooms of the genus Psilocybe for national drug control legislation. An internal transcribed spacer (ITS) is a DNA barcoding tool utilized for species identification. Many methods have been used to discriminate the ITS region, but they are often limited by having a low resolution. In this study, we sought to analyze the ITS and its fragments, ITS1 and ITS2, by using high-resolution melting (HRM) analysis, which is a rapid and sensitive method for evaluating sequence variation within PCR amplicons. The ITS HRM assay was tested for specificity, reproducibility, sensitivity, and the capacity to analyze mixture samples. It was shown that the melting temperatures of the ITS, ITS1, and ITS2 of Psilocybe cubensis were 83.72 ± 0.01, 80.98 ± 0.06, and 83.46 ± 0.08 °C, and for other species, we also obtained species-specific results. Finally, we performed ITS sequencing to validate the presumptive taxonomic identity of our samples, and the sequencing output significantly supported our HRM data. Taken together, these results indicate that the HRM method can quickly distinguish the DNA barcoding of Psilocybe cubensis and other fungi, which can be utilized for drug trafficking cases and forensic science. MDPI 2021-01-29 /pmc/articles/PMC7911181/ /pubmed/33572950 http://dx.doi.org/10.3390/genes12020199 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Xiaochun
Yu, Huan
Yang, Qi
Wang, Ziwei
Xia, Ruocheng
Chen, Chong
Qu, Yiling
Tan, Rui
Shi, Yan
Xiang, Ping
Zhang, Suhua
Li, Chengtao
A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title_full A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title_fullStr A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title_full_unstemmed A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title_short A Forensic Detection Method for Hallucinogenic Mushrooms via High-Resolution Melting (HRM) Analysis
title_sort forensic detection method for hallucinogenic mushrooms via high-resolution melting (hrm) analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911181/
https://www.ncbi.nlm.nih.gov/pubmed/33572950
http://dx.doi.org/10.3390/genes12020199
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