Cargando…
The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma
BACKGROUND: Cutaneous melanoma is defined as one of the most aggressive skin tumors in the world. An increasing body of evidence suggested an indispensable association between immune-associated gene (IAG) signature and melanoma. This article is aimed at formulating an IAG signature to estimate progn...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911606/ https://www.ncbi.nlm.nih.gov/pubmed/33688507 http://dx.doi.org/10.1155/2021/6686284 |
_version_ | 1783656381227728896 |
---|---|
author | Song, Le-Bin Luan, Jiao-Chen Zhang, Qi-Jie Chen, Lin Wang, Hao-Yang Cao, Xue-Chen Song, Ning-Hong Lu, Yan |
author_facet | Song, Le-Bin Luan, Jiao-Chen Zhang, Qi-Jie Chen, Lin Wang, Hao-Yang Cao, Xue-Chen Song, Ning-Hong Lu, Yan |
author_sort | Song, Le-Bin |
collection | PubMed |
description | BACKGROUND: Cutaneous melanoma is defined as one of the most aggressive skin tumors in the world. An increasing body of evidence suggested an indispensable association between immune-associated gene (IAG) signature and melanoma. This article is aimed at formulating an IAG signature to estimate prognosis of melanoma. METHODS: 434 melanoma patients were extracted from The Cancer Genome Atlas (TCGA) database, and 1811 IAGs were downloaded from the ImmPort database in our retrospective study. The Cox regression analysis and LASSO regression analysis were utilized to establish a prognostic IAG signature. The Kaplan-Meier (KM) survival analysis was performed, and the time-dependent receiver operating characteristic curve (ROC) analysis was further applied to assess the predictive value. Besides, the propensity score algorithm was utilized to balance the confounding clinical factors between the high- and low-risk groups. RESULTS: A total of six prognostic IAGs comprising of INHA, NDRG1, IFITM1, LHB, GBP2, and CCL8 were eventually filtered out. According to the KM survival analysis, the results displayed a shorter overall survival (OS) in the high-risk group compared to the low-risk group. In the multivariate Cox model, the gene signature was testified as a remarkable prognostic factor (HR = 45.423, P < 0.001). Additionally, the ROC curve analyses were performed which demonstrated our IAG signature was superior to four known biomarkers mentioned in the study. Moreover, the IAG signature was significantly related to immunotherapy-related biomarkers. CONCLUSION: Our study demonstrated that the six IAG signature played a critical role in the prognosis and immunotherapy of melanoma, which might help clinicians predict patients' survival and provide individualized treatment. |
format | Online Article Text |
id | pubmed-7911606 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-79116062021-03-08 The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma Song, Le-Bin Luan, Jiao-Chen Zhang, Qi-Jie Chen, Lin Wang, Hao-Yang Cao, Xue-Chen Song, Ning-Hong Lu, Yan J Immunol Res Research Article BACKGROUND: Cutaneous melanoma is defined as one of the most aggressive skin tumors in the world. An increasing body of evidence suggested an indispensable association between immune-associated gene (IAG) signature and melanoma. This article is aimed at formulating an IAG signature to estimate prognosis of melanoma. METHODS: 434 melanoma patients were extracted from The Cancer Genome Atlas (TCGA) database, and 1811 IAGs were downloaded from the ImmPort database in our retrospective study. The Cox regression analysis and LASSO regression analysis were utilized to establish a prognostic IAG signature. The Kaplan-Meier (KM) survival analysis was performed, and the time-dependent receiver operating characteristic curve (ROC) analysis was further applied to assess the predictive value. Besides, the propensity score algorithm was utilized to balance the confounding clinical factors between the high- and low-risk groups. RESULTS: A total of six prognostic IAGs comprising of INHA, NDRG1, IFITM1, LHB, GBP2, and CCL8 were eventually filtered out. According to the KM survival analysis, the results displayed a shorter overall survival (OS) in the high-risk group compared to the low-risk group. In the multivariate Cox model, the gene signature was testified as a remarkable prognostic factor (HR = 45.423, P < 0.001). Additionally, the ROC curve analyses were performed which demonstrated our IAG signature was superior to four known biomarkers mentioned in the study. Moreover, the IAG signature was significantly related to immunotherapy-related biomarkers. CONCLUSION: Our study demonstrated that the six IAG signature played a critical role in the prognosis and immunotherapy of melanoma, which might help clinicians predict patients' survival and provide individualized treatment. Hindawi 2021-02-19 /pmc/articles/PMC7911606/ /pubmed/33688507 http://dx.doi.org/10.1155/2021/6686284 Text en Copyright © 2021 Le-Bin Song et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Song, Le-Bin Luan, Jiao-Chen Zhang, Qi-Jie Chen, Lin Wang, Hao-Yang Cao, Xue-Chen Song, Ning-Hong Lu, Yan The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title | The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title_full | The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title_fullStr | The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title_full_unstemmed | The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title_short | The Identification and Validation of a Robust Immune-Associated Gene Signature in Cutaneous Melanoma |
title_sort | identification and validation of a robust immune-associated gene signature in cutaneous melanoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911606/ https://www.ncbi.nlm.nih.gov/pubmed/33688507 http://dx.doi.org/10.1155/2021/6686284 |
work_keys_str_mv | AT songlebin theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT luanjiaochen theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT zhangqijie theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT chenlin theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT wanghaoyang theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT caoxuechen theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT songninghong theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT luyan theidentificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT songlebin identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT luanjiaochen identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT zhangqijie identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT chenlin identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT wanghaoyang identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT caoxuechen identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT songninghong identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma AT luyan identificationandvalidationofarobustimmuneassociatedgenesignatureincutaneousmelanoma |