Cargando…

BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network

Efficient segmentation of Magnetic Resonance (MR) brain tumor images is of the utmost value for the diagnosis of tumor region. In recent years, advancement in the field of neural networks has been used to refine the segmentation performance of brain tumor sub-regions. The brain tumor segmentation ha...

Descripción completa

Detalles Bibliográficos
Autores principales: Rehman, Mobeen Ur, Cho, SeungBin, Kim, Jeehong, Chong, Kil To
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911842/
https://www.ncbi.nlm.nih.gov/pubmed/33504047
http://dx.doi.org/10.3390/diagnostics11020169
_version_ 1783656436920745984
author Rehman, Mobeen Ur
Cho, SeungBin
Kim, Jeehong
Chong, Kil To
author_facet Rehman, Mobeen Ur
Cho, SeungBin
Kim, Jeehong
Chong, Kil To
author_sort Rehman, Mobeen Ur
collection PubMed
description Efficient segmentation of Magnetic Resonance (MR) brain tumor images is of the utmost value for the diagnosis of tumor region. In recent years, advancement in the field of neural networks has been used to refine the segmentation performance of brain tumor sub-regions. The brain tumor segmentation has proven to be a complicated task even for neural networks, due to the small-scale tumor regions. These small-scale tumor regions are unable to be identified, the reason being their tiny size and the huge difference between area occupancy by different tumor classes. In previous state-of-the-art neural network models, the biggest problem was that the location information along with spatial details gets lost in deeper layers. To address these problems, we have proposed an encoder–decoder based model named BrainSeg-Net. The Feature Enhancer (FE) block is incorporated into the BrainSeg-Net architecture which extracts the middle-level features from low-level features from the shallow layers and shares them with the dense layers. This feature aggregation helps to achieve better performance of tumor identification. To address the problem associated with imbalance class, we have used a custom-designed loss function. For evaluation of BrainSeg-Net architecture, three benchmark datasets are utilized: BraTS2017, BraTS 2018, and BraTS 2019. Segmentation of Enhancing Core (EC), Whole Tumor (WT), and Tumor Core (TC) is carried out. The proposed architecture have exhibited good improvement when compared with existing baseline and state-of-the-art techniques. The MR brain tumor segmentation by BrainSeg-Net uses enhanced location and spatial features, which performs better than the existing plethora of brain MR image segmentation approaches.
format Online
Article
Text
id pubmed-7911842
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-79118422021-02-28 BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network Rehman, Mobeen Ur Cho, SeungBin Kim, Jeehong Chong, Kil To Diagnostics (Basel) Article Efficient segmentation of Magnetic Resonance (MR) brain tumor images is of the utmost value for the diagnosis of tumor region. In recent years, advancement in the field of neural networks has been used to refine the segmentation performance of brain tumor sub-regions. The brain tumor segmentation has proven to be a complicated task even for neural networks, due to the small-scale tumor regions. These small-scale tumor regions are unable to be identified, the reason being their tiny size and the huge difference between area occupancy by different tumor classes. In previous state-of-the-art neural network models, the biggest problem was that the location information along with spatial details gets lost in deeper layers. To address these problems, we have proposed an encoder–decoder based model named BrainSeg-Net. The Feature Enhancer (FE) block is incorporated into the BrainSeg-Net architecture which extracts the middle-level features from low-level features from the shallow layers and shares them with the dense layers. This feature aggregation helps to achieve better performance of tumor identification. To address the problem associated with imbalance class, we have used a custom-designed loss function. For evaluation of BrainSeg-Net architecture, three benchmark datasets are utilized: BraTS2017, BraTS 2018, and BraTS 2019. Segmentation of Enhancing Core (EC), Whole Tumor (WT), and Tumor Core (TC) is carried out. The proposed architecture have exhibited good improvement when compared with existing baseline and state-of-the-art techniques. The MR brain tumor segmentation by BrainSeg-Net uses enhanced location and spatial features, which performs better than the existing plethora of brain MR image segmentation approaches. MDPI 2021-01-25 /pmc/articles/PMC7911842/ /pubmed/33504047 http://dx.doi.org/10.3390/diagnostics11020169 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rehman, Mobeen Ur
Cho, SeungBin
Kim, Jeehong
Chong, Kil To
BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title_full BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title_fullStr BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title_full_unstemmed BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title_short BrainSeg-Net: Brain Tumor MR Image Segmentation via Enhanced Encoder–Decoder Network
title_sort brainseg-net: brain tumor mr image segmentation via enhanced encoder–decoder network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7911842/
https://www.ncbi.nlm.nih.gov/pubmed/33504047
http://dx.doi.org/10.3390/diagnostics11020169
work_keys_str_mv AT rehmanmobeenur brainsegnetbraintumormrimagesegmentationviaenhancedencoderdecodernetwork
AT choseungbin brainsegnetbraintumormrimagesegmentationviaenhancedencoderdecodernetwork
AT kimjeehong brainsegnetbraintumormrimagesegmentationviaenhancedencoderdecodernetwork
AT chongkilto brainsegnetbraintumormrimagesegmentationviaenhancedencoderdecodernetwork