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End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning

Conventional scoring and identification methods for coronary artery calcium (CAC) and aortic calcium (AC) result in information loss from the original image and can be time-consuming. In this study, we sought to demonstrate an end-to-end deep learning model as an alternative to the conventional meth...

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Autores principales: Singh, Gurpreet, Al’Aref, Subhi J., Lee, Benjamin C., Lee, Jing Kai, Tan, Swee Yaw, Lin, Fay Y., Chang, Hyuk-Jae, Shaw, Leslee J., Baskaran, Lohendran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913112/
https://www.ncbi.nlm.nih.gov/pubmed/33540660
http://dx.doi.org/10.3390/diagnostics11020215
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author Singh, Gurpreet
Al’Aref, Subhi J.
Lee, Benjamin C.
Lee, Jing Kai
Tan, Swee Yaw
Lin, Fay Y.
Chang, Hyuk-Jae
Shaw, Leslee J.
Baskaran, Lohendran
author_facet Singh, Gurpreet
Al’Aref, Subhi J.
Lee, Benjamin C.
Lee, Jing Kai
Tan, Swee Yaw
Lin, Fay Y.
Chang, Hyuk-Jae
Shaw, Leslee J.
Baskaran, Lohendran
author_sort Singh, Gurpreet
collection PubMed
description Conventional scoring and identification methods for coronary artery calcium (CAC) and aortic calcium (AC) result in information loss from the original image and can be time-consuming. In this study, we sought to demonstrate an end-to-end deep learning model as an alternative to the conventional methods. Scans of 377 patients with no history of coronary artery disease (CAD) were obtained and annotated. A deep learning model was trained, tested and validated in a 60:20:20 split. Within the cohort, mean age was 64.2 ± 9.8 years, and 33% were female. Left anterior descending, right coronary artery, left circumflex, triple vessel, and aortic calcifications were present in 74.87%, 55.82%, 57.41%, 46.03%, and 85.41% of patients respectively. An overall Dice score of 0.952 (interquartile range 0.921, 0.981) was achieved. Stratified by subgroups, there was no difference between male (0.948, interquartile range 0.920, 0.981) and female (0.965, interquartile range 0.933, 0.980) patients (p = 0.350), or, between age <65 (0.950, interquartile range 0.913, 0.981) and age ≥65 (0.957, interquartile range 0.930, 0.9778) (p = 0.742). There was good correlation and agreement for CAC prediction (rho = 0.876, p < 0.001), with a mean difference of 11.2% (p = 0.100). AC correlated well (rho = 0.947, p < 0.001), with a mean difference of 9% (p = 0.070). Automated segmentation took approximately 4 s per patient. Taken together, the deep-end learning model was able to robustly identify vessel-specific CAC and AC with high accuracy, and predict Agatston scores that correlated well with manual annotation, facilitating application into areas of research and clinical importance.
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spelling pubmed-79131122021-02-28 End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning Singh, Gurpreet Al’Aref, Subhi J. Lee, Benjamin C. Lee, Jing Kai Tan, Swee Yaw Lin, Fay Y. Chang, Hyuk-Jae Shaw, Leslee J. Baskaran, Lohendran Diagnostics (Basel) Article Conventional scoring and identification methods for coronary artery calcium (CAC) and aortic calcium (AC) result in information loss from the original image and can be time-consuming. In this study, we sought to demonstrate an end-to-end deep learning model as an alternative to the conventional methods. Scans of 377 patients with no history of coronary artery disease (CAD) were obtained and annotated. A deep learning model was trained, tested and validated in a 60:20:20 split. Within the cohort, mean age was 64.2 ± 9.8 years, and 33% were female. Left anterior descending, right coronary artery, left circumflex, triple vessel, and aortic calcifications were present in 74.87%, 55.82%, 57.41%, 46.03%, and 85.41% of patients respectively. An overall Dice score of 0.952 (interquartile range 0.921, 0.981) was achieved. Stratified by subgroups, there was no difference between male (0.948, interquartile range 0.920, 0.981) and female (0.965, interquartile range 0.933, 0.980) patients (p = 0.350), or, between age <65 (0.950, interquartile range 0.913, 0.981) and age ≥65 (0.957, interquartile range 0.930, 0.9778) (p = 0.742). There was good correlation and agreement for CAC prediction (rho = 0.876, p < 0.001), with a mean difference of 11.2% (p = 0.100). AC correlated well (rho = 0.947, p < 0.001), with a mean difference of 9% (p = 0.070). Automated segmentation took approximately 4 s per patient. Taken together, the deep-end learning model was able to robustly identify vessel-specific CAC and AC with high accuracy, and predict Agatston scores that correlated well with manual annotation, facilitating application into areas of research and clinical importance. MDPI 2021-02-02 /pmc/articles/PMC7913112/ /pubmed/33540660 http://dx.doi.org/10.3390/diagnostics11020215 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Singh, Gurpreet
Al’Aref, Subhi J.
Lee, Benjamin C.
Lee, Jing Kai
Tan, Swee Yaw
Lin, Fay Y.
Chang, Hyuk-Jae
Shaw, Leslee J.
Baskaran, Lohendran
End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title_full End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title_fullStr End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title_full_unstemmed End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title_short End-to-End, Pixel-Wise Vessel-Specific Coronary and Aortic Calcium Detection and Scoring Using Deep Learning
title_sort end-to-end, pixel-wise vessel-specific coronary and aortic calcium detection and scoring using deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913112/
https://www.ncbi.nlm.nih.gov/pubmed/33540660
http://dx.doi.org/10.3390/diagnostics11020215
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