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Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma

BACKGROUND: Malignant brain tumor diseases exhibit differences within molecular features depending on the patient’s age. METHODS: In this work, we use gene mutation data from public resources to explore age specifics about glioma. We use both an explainable clustering as well as classification appro...

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Autores principales: Jean-Quartier, Claire, Jeanquartier, Fleur, Ridvan, Aydin, Kargl, Matthias, Mirza, Tica, Stangl, Tobias, Markaĉ, Robi, Jurada, Mauro, Holzinger, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913451/
https://www.ncbi.nlm.nih.gov/pubmed/33639927
http://dx.doi.org/10.1186/s12911-021-01420-1
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author Jean-Quartier, Claire
Jeanquartier, Fleur
Ridvan, Aydin
Kargl, Matthias
Mirza, Tica
Stangl, Tobias
Markaĉ, Robi
Jurada, Mauro
Holzinger, Andreas
author_facet Jean-Quartier, Claire
Jeanquartier, Fleur
Ridvan, Aydin
Kargl, Matthias
Mirza, Tica
Stangl, Tobias
Markaĉ, Robi
Jurada, Mauro
Holzinger, Andreas
author_sort Jean-Quartier, Claire
collection PubMed
description BACKGROUND: Malignant brain tumor diseases exhibit differences within molecular features depending on the patient’s age. METHODS: In this work, we use gene mutation data from public resources to explore age specifics about glioma. We use both an explainable clustering as well as classification approach to find and interpret age-based differences in brain tumor diseases. We estimate age clusters and correlate age specific biomarkers. RESULTS: Age group classification shows known age specifics but also points out several genes which, so far, have not been associated with glioma classification. CONCLUSIONS: We highlight mutated genes to be characteristic for certain age groups and suggest novel age-based biomarkers and targets.
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spelling pubmed-79134512021-03-02 Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma Jean-Quartier, Claire Jeanquartier, Fleur Ridvan, Aydin Kargl, Matthias Mirza, Tica Stangl, Tobias Markaĉ, Robi Jurada, Mauro Holzinger, Andreas BMC Med Inform Decis Mak Research Article BACKGROUND: Malignant brain tumor diseases exhibit differences within molecular features depending on the patient’s age. METHODS: In this work, we use gene mutation data from public resources to explore age specifics about glioma. We use both an explainable clustering as well as classification approach to find and interpret age-based differences in brain tumor diseases. We estimate age clusters and correlate age specific biomarkers. RESULTS: Age group classification shows known age specifics but also points out several genes which, so far, have not been associated with glioma classification. CONCLUSIONS: We highlight mutated genes to be characteristic for certain age groups and suggest novel age-based biomarkers and targets. BioMed Central 2021-02-27 /pmc/articles/PMC7913451/ /pubmed/33639927 http://dx.doi.org/10.1186/s12911-021-01420-1 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Jean-Quartier, Claire
Jeanquartier, Fleur
Ridvan, Aydin
Kargl, Matthias
Mirza, Tica
Stangl, Tobias
Markaĉ, Robi
Jurada, Mauro
Holzinger, Andreas
Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title_full Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title_fullStr Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title_full_unstemmed Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title_short Mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
title_sort mutation-based clustering and classification analysis reveals distinctive age groups and age-related biomarkers for glioma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913451/
https://www.ncbi.nlm.nih.gov/pubmed/33639927
http://dx.doi.org/10.1186/s12911-021-01420-1
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