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A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates

New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the...

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Autores principales: Shen, Dan, Song, Chengyi, Miskey, Csaba, Chan, Shuheng, Guan, Zhongxia, Sang, Yatong, Wang, Yali, Chen, Cai, Wang, Xiaoyan, Müller, Ferenc, Ivics, Zoltán, Gao, Bo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913693/
https://www.ncbi.nlm.nih.gov/pubmed/33638993
http://dx.doi.org/10.1093/nar/gkab045
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author Shen, Dan
Song, Chengyi
Miskey, Csaba
Chan, Shuheng
Guan, Zhongxia
Sang, Yatong
Wang, Yali
Chen, Cai
Wang, Xiaoyan
Müller, Ferenc
Ivics, Zoltán
Gao, Bo
author_facet Shen, Dan
Song, Chengyi
Miskey, Csaba
Chan, Shuheng
Guan, Zhongxia
Sang, Yatong
Wang, Yali
Chen, Cai
Wang, Xiaoyan
Müller, Ferenc
Ivics, Zoltán
Gao, Bo
author_sort Shen, Dan
collection PubMed
description New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the range of those of the widely used transposons piggyBac (PB), Sleeping Beauty (SB) and Tol2. ZB has a similar structural organization and target site sequence preference to SB, but a different integration profile with respect to genome-wide preference among mammalian functional annotation features. Namely, ZB displays a preference for integration into transcriptional regulatory regions of genes. Accordingly, we demonstrate the utility of ZB for enhancer trapping in zebrafish embryos and in the mouse germline. These results indicate that ZB may be a powerful tool for genetic manipulation in vertebrate model species.
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spelling pubmed-79136932021-03-03 A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates Shen, Dan Song, Chengyi Miskey, Csaba Chan, Shuheng Guan, Zhongxia Sang, Yatong Wang, Yali Chen, Cai Wang, Xiaoyan Müller, Ferenc Ivics, Zoltán Gao, Bo Nucleic Acids Res Molecular Biology New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the range of those of the widely used transposons piggyBac (PB), Sleeping Beauty (SB) and Tol2. ZB has a similar structural organization and target site sequence preference to SB, but a different integration profile with respect to genome-wide preference among mammalian functional annotation features. Namely, ZB displays a preference for integration into transcriptional regulatory regions of genes. Accordingly, we demonstrate the utility of ZB for enhancer trapping in zebrafish embryos and in the mouse germline. These results indicate that ZB may be a powerful tool for genetic manipulation in vertebrate model species. Oxford University Press 2021-02-08 /pmc/articles/PMC7913693/ /pubmed/33638993 http://dx.doi.org/10.1093/nar/gkab045 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Molecular Biology
Shen, Dan
Song, Chengyi
Miskey, Csaba
Chan, Shuheng
Guan, Zhongxia
Sang, Yatong
Wang, Yali
Chen, Cai
Wang, Xiaoyan
Müller, Ferenc
Ivics, Zoltán
Gao, Bo
A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title_full A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title_fullStr A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title_full_unstemmed A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title_short A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
title_sort native, highly active tc1/mariner transposon from zebrafish (zb) offers an efficient genetic manipulation tool for vertebrates
topic Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913693/
https://www.ncbi.nlm.nih.gov/pubmed/33638993
http://dx.doi.org/10.1093/nar/gkab045
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