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A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates
New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913693/ https://www.ncbi.nlm.nih.gov/pubmed/33638993 http://dx.doi.org/10.1093/nar/gkab045 |
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author | Shen, Dan Song, Chengyi Miskey, Csaba Chan, Shuheng Guan, Zhongxia Sang, Yatong Wang, Yali Chen, Cai Wang, Xiaoyan Müller, Ferenc Ivics, Zoltán Gao, Bo |
author_facet | Shen, Dan Song, Chengyi Miskey, Csaba Chan, Shuheng Guan, Zhongxia Sang, Yatong Wang, Yali Chen, Cai Wang, Xiaoyan Müller, Ferenc Ivics, Zoltán Gao, Bo |
author_sort | Shen, Dan |
collection | PubMed |
description | New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the range of those of the widely used transposons piggyBac (PB), Sleeping Beauty (SB) and Tol2. ZB has a similar structural organization and target site sequence preference to SB, but a different integration profile with respect to genome-wide preference among mammalian functional annotation features. Namely, ZB displays a preference for integration into transcriptional regulatory regions of genes. Accordingly, we demonstrate the utility of ZB for enhancer trapping in zebrafish embryos and in the mouse germline. These results indicate that ZB may be a powerful tool for genetic manipulation in vertebrate model species. |
format | Online Article Text |
id | pubmed-7913693 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-79136932021-03-03 A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates Shen, Dan Song, Chengyi Miskey, Csaba Chan, Shuheng Guan, Zhongxia Sang, Yatong Wang, Yali Chen, Cai Wang, Xiaoyan Müller, Ferenc Ivics, Zoltán Gao, Bo Nucleic Acids Res Molecular Biology New genetic tools and strategies are currently under development to facilitate functional genomics analyses. Here, we describe an active member of the Tc1/mariner transposon superfamily, named ZB, which invaded the zebrafish genome very recently. ZB exhibits high activity in vertebrate cells, in the range of those of the widely used transposons piggyBac (PB), Sleeping Beauty (SB) and Tol2. ZB has a similar structural organization and target site sequence preference to SB, but a different integration profile with respect to genome-wide preference among mammalian functional annotation features. Namely, ZB displays a preference for integration into transcriptional regulatory regions of genes. Accordingly, we demonstrate the utility of ZB for enhancer trapping in zebrafish embryos and in the mouse germline. These results indicate that ZB may be a powerful tool for genetic manipulation in vertebrate model species. Oxford University Press 2021-02-08 /pmc/articles/PMC7913693/ /pubmed/33638993 http://dx.doi.org/10.1093/nar/gkab045 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Molecular Biology Shen, Dan Song, Chengyi Miskey, Csaba Chan, Shuheng Guan, Zhongxia Sang, Yatong Wang, Yali Chen, Cai Wang, Xiaoyan Müller, Ferenc Ivics, Zoltán Gao, Bo A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title | A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title_full | A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title_fullStr | A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title_full_unstemmed | A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title_short | A native, highly active Tc1/mariner transposon from zebrafish (ZB) offers an efficient genetic manipulation tool for vertebrates |
title_sort | native, highly active tc1/mariner transposon from zebrafish (zb) offers an efficient genetic manipulation tool for vertebrates |
topic | Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913693/ https://www.ncbi.nlm.nih.gov/pubmed/33638993 http://dx.doi.org/10.1093/nar/gkab045 |
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