Cargando…

Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China

Ecological adaptation plays an important role in the process of plant expansion, and genetics and epigenetics are important in the process of plant adaptation. In this study, genetic and epigenetic analyses and soil properties were performed on D. angustifolia of 17 populations, which were selected...

Descripción completa

Detalles Bibliográficos
Autores principales: Ni, Biao, You, Jian, Li, Jiangnan, Du, Yingda, Zhao, Wei, Chen, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913720/
https://www.ncbi.nlm.nih.gov/pubmed/33546517
http://dx.doi.org/10.3390/plants10020291
_version_ 1783656867133652992
author Ni, Biao
You, Jian
Li, Jiangnan
Du, Yingda
Zhao, Wei
Chen, Xia
author_facet Ni, Biao
You, Jian
Li, Jiangnan
Du, Yingda
Zhao, Wei
Chen, Xia
author_sort Ni, Biao
collection PubMed
description Ecological adaptation plays an important role in the process of plant expansion, and genetics and epigenetics are important in the process of plant adaptation. In this study, genetic and epigenetic analyses and soil properties were performed on D. angustifolia of 17 populations, which were selected in the tundra zone on the western slope of the Changbai Mountains. Our results showed that the levels of genetic and epigenetic diversity of D. angustifolia were relatively low, and the main variation occurred among different populations (amplified fragment length polymorphism (AFLP): 95%, methylation sensitive amplification polymorphism (MSAP): 87%). In addition, DNA methylation levels varied from 23.36% to 35.70%. Principal component analysis (PCA) results showed that soil properties of different populations were heterogeneous. Correlation analyses showed that soil moisture, pH and total nitrogen were significantly correlated with genetic diversity of D. angustifolia, and soil temperature and pH were closely related to epigenetic diversity. Simple Mantel tests and partial Mantel tests showed that genetic variation significantly correlated with habitat or geographical distance. However, the correlation between epigenetic variation and habitat or geographical distance was not significant. Our results showed that, in the case of low genetic variation and genetic diversity, epigenetic variation and DNA methylation may provide a basis for the adaptation of D. angustifolia.
format Online
Article
Text
id pubmed-7913720
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-79137202021-02-28 Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China Ni, Biao You, Jian Li, Jiangnan Du, Yingda Zhao, Wei Chen, Xia Plants (Basel) Article Ecological adaptation plays an important role in the process of plant expansion, and genetics and epigenetics are important in the process of plant adaptation. In this study, genetic and epigenetic analyses and soil properties were performed on D. angustifolia of 17 populations, which were selected in the tundra zone on the western slope of the Changbai Mountains. Our results showed that the levels of genetic and epigenetic diversity of D. angustifolia were relatively low, and the main variation occurred among different populations (amplified fragment length polymorphism (AFLP): 95%, methylation sensitive amplification polymorphism (MSAP): 87%). In addition, DNA methylation levels varied from 23.36% to 35.70%. Principal component analysis (PCA) results showed that soil properties of different populations were heterogeneous. Correlation analyses showed that soil moisture, pH and total nitrogen were significantly correlated with genetic diversity of D. angustifolia, and soil temperature and pH were closely related to epigenetic diversity. Simple Mantel tests and partial Mantel tests showed that genetic variation significantly correlated with habitat or geographical distance. However, the correlation between epigenetic variation and habitat or geographical distance was not significant. Our results showed that, in the case of low genetic variation and genetic diversity, epigenetic variation and DNA methylation may provide a basis for the adaptation of D. angustifolia. MDPI 2021-02-03 /pmc/articles/PMC7913720/ /pubmed/33546517 http://dx.doi.org/10.3390/plants10020291 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ni, Biao
You, Jian
Li, Jiangnan
Du, Yingda
Zhao, Wei
Chen, Xia
Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title_full Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title_fullStr Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title_full_unstemmed Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title_short Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
title_sort genetic and epigenetic changes during the upward expansion of deyeuxia angustifolia kom. in the alpine tundra of the changbai mountains, china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7913720/
https://www.ncbi.nlm.nih.gov/pubmed/33546517
http://dx.doi.org/10.3390/plants10020291
work_keys_str_mv AT nibiao geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina
AT youjian geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina
AT lijiangnan geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina
AT duyingda geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina
AT zhaowei geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina
AT chenxia geneticandepigeneticchangesduringtheupwardexpansionofdeyeuxiaangustifoliakominthealpinetundraofthechangbaimountainschina