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Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isotherm...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7915047/ https://www.ncbi.nlm.nih.gov/pubmed/33562822 http://dx.doi.org/10.3390/mi12020159 |
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author | Becherer, Lisa Hess, Jacob Friedrich Frischmann, Sieghard Bakheit, Mohammed Nitschko, Hans Stinco, Silvina Zitz, Friedrich Hofer, Hannes Porro, Giampiero Hausladen, Florian Stock, Karl Drossart, Dominik Wurm, Holger Kuhn, Hanna Huber, Dominik Hutzenlaub, Tobias Paust, Nils Keller, Mark Strohmeier, Oliver Wadle, Simon Borst, Nadine Zengerle, Roland von Stetten, Felix |
author_facet | Becherer, Lisa Hess, Jacob Friedrich Frischmann, Sieghard Bakheit, Mohammed Nitschko, Hans Stinco, Silvina Zitz, Friedrich Hofer, Hannes Porro, Giampiero Hausladen, Florian Stock, Karl Drossart, Dominik Wurm, Holger Kuhn, Hanna Huber, Dominik Hutzenlaub, Tobias Paust, Nils Keller, Mark Strohmeier, Oliver Wadle, Simon Borst, Nadine Zengerle, Roland von Stetten, Felix |
author_sort | Becherer, Lisa |
collection | PubMed |
description | This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isothermal amplification). A disposable microfluidic LabDisk with pre-stored reagents performs automated nucleic acid extraction, reaction setup, emulsification, reverse transcription, digital DNA amplification, and quantitative fluorogenic endpoint detection with universal reporter molecules. Automated nucleic acid extraction from a suspension of HTLV-1-infected CD4+ T-lymphocytes (MT-2 cells) yielded 8 ± 7 viral nucleic acid copies per MT-2 cell, very similar to the manual reference extraction (7 ± 2 nucleic acid copies). Fully automated sample processing from whole blood spiked with MT-2 cells showed a comparable result of 7 ± 3 copies per MT-2 cell after a run time of two hours and 10 min. |
format | Online Article Text |
id | pubmed-7915047 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-79150472021-03-01 Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP Becherer, Lisa Hess, Jacob Friedrich Frischmann, Sieghard Bakheit, Mohammed Nitschko, Hans Stinco, Silvina Zitz, Friedrich Hofer, Hannes Porro, Giampiero Hausladen, Florian Stock, Karl Drossart, Dominik Wurm, Holger Kuhn, Hanna Huber, Dominik Hutzenlaub, Tobias Paust, Nils Keller, Mark Strohmeier, Oliver Wadle, Simon Borst, Nadine Zengerle, Roland von Stetten, Felix Micromachines (Basel) Article This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isothermal amplification). A disposable microfluidic LabDisk with pre-stored reagents performs automated nucleic acid extraction, reaction setup, emulsification, reverse transcription, digital DNA amplification, and quantitative fluorogenic endpoint detection with universal reporter molecules. Automated nucleic acid extraction from a suspension of HTLV-1-infected CD4+ T-lymphocytes (MT-2 cells) yielded 8 ± 7 viral nucleic acid copies per MT-2 cell, very similar to the manual reference extraction (7 ± 2 nucleic acid copies). Fully automated sample processing from whole blood spiked with MT-2 cells showed a comparable result of 7 ± 3 copies per MT-2 cell after a run time of two hours and 10 min. MDPI 2021-02-05 /pmc/articles/PMC7915047/ /pubmed/33562822 http://dx.doi.org/10.3390/mi12020159 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Becherer, Lisa Hess, Jacob Friedrich Frischmann, Sieghard Bakheit, Mohammed Nitschko, Hans Stinco, Silvina Zitz, Friedrich Hofer, Hannes Porro, Giampiero Hausladen, Florian Stock, Karl Drossart, Dominik Wurm, Holger Kuhn, Hanna Huber, Dominik Hutzenlaub, Tobias Paust, Nils Keller, Mark Strohmeier, Oliver Wadle, Simon Borst, Nadine Zengerle, Roland von Stetten, Felix Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title | Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title_full | Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title_fullStr | Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title_full_unstemmed | Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title_short | Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP |
title_sort | point-of-care system for htlv-1 proviral load quantification by digital mediator displacement lamp |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7915047/ https://www.ncbi.nlm.nih.gov/pubmed/33562822 http://dx.doi.org/10.3390/mi12020159 |
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