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Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP

This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isotherm...

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Autores principales: Becherer, Lisa, Hess, Jacob Friedrich, Frischmann, Sieghard, Bakheit, Mohammed, Nitschko, Hans, Stinco, Silvina, Zitz, Friedrich, Hofer, Hannes, Porro, Giampiero, Hausladen, Florian, Stock, Karl, Drossart, Dominik, Wurm, Holger, Kuhn, Hanna, Huber, Dominik, Hutzenlaub, Tobias, Paust, Nils, Keller, Mark, Strohmeier, Oliver, Wadle, Simon, Borst, Nadine, Zengerle, Roland, von Stetten, Felix
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7915047/
https://www.ncbi.nlm.nih.gov/pubmed/33562822
http://dx.doi.org/10.3390/mi12020159
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author Becherer, Lisa
Hess, Jacob Friedrich
Frischmann, Sieghard
Bakheit, Mohammed
Nitschko, Hans
Stinco, Silvina
Zitz, Friedrich
Hofer, Hannes
Porro, Giampiero
Hausladen, Florian
Stock, Karl
Drossart, Dominik
Wurm, Holger
Kuhn, Hanna
Huber, Dominik
Hutzenlaub, Tobias
Paust, Nils
Keller, Mark
Strohmeier, Oliver
Wadle, Simon
Borst, Nadine
Zengerle, Roland
von Stetten, Felix
author_facet Becherer, Lisa
Hess, Jacob Friedrich
Frischmann, Sieghard
Bakheit, Mohammed
Nitschko, Hans
Stinco, Silvina
Zitz, Friedrich
Hofer, Hannes
Porro, Giampiero
Hausladen, Florian
Stock, Karl
Drossart, Dominik
Wurm, Holger
Kuhn, Hanna
Huber, Dominik
Hutzenlaub, Tobias
Paust, Nils
Keller, Mark
Strohmeier, Oliver
Wadle, Simon
Borst, Nadine
Zengerle, Roland
von Stetten, Felix
author_sort Becherer, Lisa
collection PubMed
description This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isothermal amplification). A disposable microfluidic LabDisk with pre-stored reagents performs automated nucleic acid extraction, reaction setup, emulsification, reverse transcription, digital DNA amplification, and quantitative fluorogenic endpoint detection with universal reporter molecules. Automated nucleic acid extraction from a suspension of HTLV-1-infected CD4+ T-lymphocytes (MT-2 cells) yielded 8 ± 7 viral nucleic acid copies per MT-2 cell, very similar to the manual reference extraction (7 ± 2 nucleic acid copies). Fully automated sample processing from whole blood spiked with MT-2 cells showed a comparable result of 7 ± 3 copies per MT-2 cell after a run time of two hours and 10 min.
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spelling pubmed-79150472021-03-01 Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP Becherer, Lisa Hess, Jacob Friedrich Frischmann, Sieghard Bakheit, Mohammed Nitschko, Hans Stinco, Silvina Zitz, Friedrich Hofer, Hannes Porro, Giampiero Hausladen, Florian Stock, Karl Drossart, Dominik Wurm, Holger Kuhn, Hanna Huber, Dominik Hutzenlaub, Tobias Paust, Nils Keller, Mark Strohmeier, Oliver Wadle, Simon Borst, Nadine Zengerle, Roland von Stetten, Felix Micromachines (Basel) Article This paper presents a universal point-of-care system for fully automated quantification of human T-cell lymphotropic virus type 1 (HTLV-1) proviral load, including genomic RNA, based on digital reverse RNA transcription and c-DNA amplification by MD LAMP (mediator displacement loop-mediated isothermal amplification). A disposable microfluidic LabDisk with pre-stored reagents performs automated nucleic acid extraction, reaction setup, emulsification, reverse transcription, digital DNA amplification, and quantitative fluorogenic endpoint detection with universal reporter molecules. Automated nucleic acid extraction from a suspension of HTLV-1-infected CD4+ T-lymphocytes (MT-2 cells) yielded 8 ± 7 viral nucleic acid copies per MT-2 cell, very similar to the manual reference extraction (7 ± 2 nucleic acid copies). Fully automated sample processing from whole blood spiked with MT-2 cells showed a comparable result of 7 ± 3 copies per MT-2 cell after a run time of two hours and 10 min. MDPI 2021-02-05 /pmc/articles/PMC7915047/ /pubmed/33562822 http://dx.doi.org/10.3390/mi12020159 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Becherer, Lisa
Hess, Jacob Friedrich
Frischmann, Sieghard
Bakheit, Mohammed
Nitschko, Hans
Stinco, Silvina
Zitz, Friedrich
Hofer, Hannes
Porro, Giampiero
Hausladen, Florian
Stock, Karl
Drossart, Dominik
Wurm, Holger
Kuhn, Hanna
Huber, Dominik
Hutzenlaub, Tobias
Paust, Nils
Keller, Mark
Strohmeier, Oliver
Wadle, Simon
Borst, Nadine
Zengerle, Roland
von Stetten, Felix
Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title_full Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title_fullStr Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title_full_unstemmed Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title_short Point-of-Care System for HTLV-1 Proviral Load Quantification by Digital Mediator Displacement LAMP
title_sort point-of-care system for htlv-1 proviral load quantification by digital mediator displacement lamp
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7915047/
https://www.ncbi.nlm.nih.gov/pubmed/33562822
http://dx.doi.org/10.3390/mi12020159
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