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HR-MAS NMR Applications in Plant Metabolomics
Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916392/ https://www.ncbi.nlm.nih.gov/pubmed/33578691 http://dx.doi.org/10.3390/molecules26040931 |
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author | Augustijn, Dieuwertje de Groot, Huub J. M. Alia, A. |
author_facet | Augustijn, Dieuwertje de Groot, Huub J. M. Alia, A. |
author_sort | Augustijn, Dieuwertje |
collection | PubMed |
description | Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain the metabolic profile. This extraction step can be eliminated by making use of high-resolution magic angle spinning (HR-MAS) NMR. In this review, an HR-MAS NMR-based workflow is described in more detail, including used pulse sequences in metabolomics. The pre-processing steps of one-dimensional HR-MAS NMR spectra are presented, including spectral alignment, baseline correction, bucketing, normalisation and scaling procedures. We also highlight some of the models which can be used to perform multivariate analysis on the HR-MAS NMR spectra. Finally, applications of HR-MAS NMR in plant metabolomics are described and show that HR-MAS NMR is a powerful tool for plant metabolomics studies. |
format | Online Article Text |
id | pubmed-7916392 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-79163922021-03-01 HR-MAS NMR Applications in Plant Metabolomics Augustijn, Dieuwertje de Groot, Huub J. M. Alia, A. Molecules Review Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain the metabolic profile. This extraction step can be eliminated by making use of high-resolution magic angle spinning (HR-MAS) NMR. In this review, an HR-MAS NMR-based workflow is described in more detail, including used pulse sequences in metabolomics. The pre-processing steps of one-dimensional HR-MAS NMR spectra are presented, including spectral alignment, baseline correction, bucketing, normalisation and scaling procedures. We also highlight some of the models which can be used to perform multivariate analysis on the HR-MAS NMR spectra. Finally, applications of HR-MAS NMR in plant metabolomics are described and show that HR-MAS NMR is a powerful tool for plant metabolomics studies. MDPI 2021-02-10 /pmc/articles/PMC7916392/ /pubmed/33578691 http://dx.doi.org/10.3390/molecules26040931 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Augustijn, Dieuwertje de Groot, Huub J. M. Alia, A. HR-MAS NMR Applications in Plant Metabolomics |
title | HR-MAS NMR Applications in Plant Metabolomics |
title_full | HR-MAS NMR Applications in Plant Metabolomics |
title_fullStr | HR-MAS NMR Applications in Plant Metabolomics |
title_full_unstemmed | HR-MAS NMR Applications in Plant Metabolomics |
title_short | HR-MAS NMR Applications in Plant Metabolomics |
title_sort | hr-mas nmr applications in plant metabolomics |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916392/ https://www.ncbi.nlm.nih.gov/pubmed/33578691 http://dx.doi.org/10.3390/molecules26040931 |
work_keys_str_mv | AT augustijndieuwertje hrmasnmrapplicationsinplantmetabolomics AT degroothuubjm hrmasnmrapplicationsinplantmetabolomics AT aliaa hrmasnmrapplicationsinplantmetabolomics |