Cargando…

HR-MAS NMR Applications in Plant Metabolomics

Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain...

Descripción completa

Detalles Bibliográficos
Autores principales: Augustijn, Dieuwertje, de Groot, Huub J. M., Alia, A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916392/
https://www.ncbi.nlm.nih.gov/pubmed/33578691
http://dx.doi.org/10.3390/molecules26040931
_version_ 1783657468779298816
author Augustijn, Dieuwertje
de Groot, Huub J. M.
Alia, A.
author_facet Augustijn, Dieuwertje
de Groot, Huub J. M.
Alia, A.
author_sort Augustijn, Dieuwertje
collection PubMed
description Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain the metabolic profile. This extraction step can be eliminated by making use of high-resolution magic angle spinning (HR-MAS) NMR. In this review, an HR-MAS NMR-based workflow is described in more detail, including used pulse sequences in metabolomics. The pre-processing steps of one-dimensional HR-MAS NMR spectra are presented, including spectral alignment, baseline correction, bucketing, normalisation and scaling procedures. We also highlight some of the models which can be used to perform multivariate analysis on the HR-MAS NMR spectra. Finally, applications of HR-MAS NMR in plant metabolomics are described and show that HR-MAS NMR is a powerful tool for plant metabolomics studies.
format Online
Article
Text
id pubmed-7916392
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-79163922021-03-01 HR-MAS NMR Applications in Plant Metabolomics Augustijn, Dieuwertje de Groot, Huub J. M. Alia, A. Molecules Review Metabolomics is used to reduce the complexity of plants and to understand the underlying pathways of the plant phenotype. The metabolic profile of plants can be obtained by mass spectrometry or liquid-state NMR. The extraction of metabolites from the sample is necessary for both techniques to obtain the metabolic profile. This extraction step can be eliminated by making use of high-resolution magic angle spinning (HR-MAS) NMR. In this review, an HR-MAS NMR-based workflow is described in more detail, including used pulse sequences in metabolomics. The pre-processing steps of one-dimensional HR-MAS NMR spectra are presented, including spectral alignment, baseline correction, bucketing, normalisation and scaling procedures. We also highlight some of the models which can be used to perform multivariate analysis on the HR-MAS NMR spectra. Finally, applications of HR-MAS NMR in plant metabolomics are described and show that HR-MAS NMR is a powerful tool for plant metabolomics studies. MDPI 2021-02-10 /pmc/articles/PMC7916392/ /pubmed/33578691 http://dx.doi.org/10.3390/molecules26040931 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Augustijn, Dieuwertje
de Groot, Huub J. M.
Alia, A.
HR-MAS NMR Applications in Plant Metabolomics
title HR-MAS NMR Applications in Plant Metabolomics
title_full HR-MAS NMR Applications in Plant Metabolomics
title_fullStr HR-MAS NMR Applications in Plant Metabolomics
title_full_unstemmed HR-MAS NMR Applications in Plant Metabolomics
title_short HR-MAS NMR Applications in Plant Metabolomics
title_sort hr-mas nmr applications in plant metabolomics
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7916392/
https://www.ncbi.nlm.nih.gov/pubmed/33578691
http://dx.doi.org/10.3390/molecules26040931
work_keys_str_mv AT augustijndieuwertje hrmasnmrapplicationsinplantmetabolomics
AT degroothuubjm hrmasnmrapplicationsinplantmetabolomics
AT aliaa hrmasnmrapplicationsinplantmetabolomics