Cargando…

DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions

Soil-borne microbes are major ecological players in terrestrial environments since they cycle organic matter, channel nutrients across trophic levels and influence plant growth and health. Therefore, the identification, taxonomic characterization and determination of the ecological role of members o...

Descripción completa

Detalles Bibliográficos
Autores principales:	Francioli, Davide, Lentendu, Guillaume, Lewin, Simon, Kolb, Steffen
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2021
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7918050/ https://www.ncbi.nlm.nih.gov/pubmed/33673098 http://dx.doi.org/10.3390/microorganisms9020361

Ejemplares similares

Crop host signatures reflected by co-association patterns of keystone Bacteria in the rhizosphere microbiota
por: Lewin, Simon, et al.
Publicado: (2021)

Environmental DNA Metabarcoding: A Novel Contrivance for Documenting Terrestrial Biodiversity
por: Hassan, Shahnawaz, et al.
Publicado: (2022)

Validation of COI metabarcoding primers for terrestrial arthropods
por: Elbrecht, Vasco, et al.
Publicado: (2019)

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies
por: Francioli, Davide, et al.
Publicado: (2016)

Leaf bacterial microbiota response to flooding is controlled by plant phenology in wheat (Triticum aestivum L.)
por: Francioli, Davide, et al.
Publicado: (2022)

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods
por: Thomsen, Philip Francis, et al.
Publicado: (2019)

Trichoderma spp.-mediated mitigation of heat, drought, and their combination on the Arabidopsis thaliana holobiont: a metabolomics and metabarcoding approach
por: Senizza, Biancamaria, et al.
Publicado: (2023)

Non-destructive collection and metabarcoding of arthropod environmental DNA remained on a terrestrial plant
por: Yoneya, Kinuyo, et al.
Publicado: (2023)

Flooding Causes Dramatic Compositional Shifts and Depletion of Putative Beneficial Bacteria on the Spring Wheat Microbiota
por: Francioli, Davide, et al.
Publicado: (2021)

Influence of Commonly Used Primer Systems on Automated Ribosomal Intergenic Spacer Analysis of Bacterial Communities in Environmental Samples
por: Purahong, Witoon, et al.
Publicado: (2015)

Effects of consumer surface sterilization on diet DNA metabarcoding data of terrestrial invertebrates in natural environments and feeding trials
por: Miller‐ter Kuile, Ana, et al.
Publicado: (2021)

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators
por: Porter, Teresita M., et al.
Publicado: (2019)

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool – prospects, pitfalls and avenues to be developed
por: Schnell, Ida Bærholm, et al.
Publicado: (2015)

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
por: Arribas, Paula, et al.
Publicado: (2022)

Response of the wheat mycobiota to flooding revealed substantial shifts towards plant pathogens
por: Francioli, Davide, et al.
Publicado: (2022)

Strategies for sample labelling and library preparation in DNA metabarcoding studies
por: Bohmann, Kristine, et al.
Publicado: (2021)

Characterizing parasitic nematode faunas in faeces and soil using DNA metabarcoding
por: Davey, Marie Louise, et al.
Publicado: (2021)

Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities
por: Schenk, Janina, et al.
Publicado: (2020)

Characterizing the secret diets of siphonophores (Cnidaria: Hydrozoa) using DNA metabarcoding
por: Damian-Serrano, Alejandro, et al.
Publicado: (2022)

Characterization of the Fungal Community in Fritillariae Cirrhosae Bulbus through DNA Metabarcoding
por: Yu, Jingsheng, et al.
Publicado: (2022)

Benefits and Limitations of DNA Barcoding and Metabarcoding in Herbal Product Authentication
por: Raclariu, Ancuta Cristina, et al.
Publicado: (2017)

Advances in DNA metabarcoding for food and wildlife forensic species identification
por: Staats, Martijn, et al.
Publicado: (2016)

Insights in Pharmaceutical Pollution: The Prospective Role of eDNA Metabarcoding
por: Papaioannou, Charikleia, et al.
Publicado: (2023)

Pitfalls of DNA Quantification Using DNA-Binding Fluorescent Dyes and Suggested Solutions
por: Nakayama, Yuki, et al.
Publicado: (2016)

Acidotolerant Bacteria and Fungi as a Sink of Methanol-Derived Carbon in a Deciduous Forest Soil
por: Morawe, Mareen, et al.
Publicado: (2017)

DNA Metabarcoding of Amazonian Ichthyoplankton Swarms
por: Maggia, M. E., et al.
Publicado: (2017)

Assessing insect biodiversity with automatic light traps in Brazil: Pearls and pitfalls of metabarcoding samples in preservative ethanol
por: Zenker, Mauricio M., et al.
Publicado: (2020)

Sepsis guideline implementation: benefits, pitfalls and possible solutions
por: Kissoon, Niranjan
Publicado: (2014)

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
por: Piper, Alexander M, et al.
Publicado: (2019)

Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients
por: Hamad, Ibrahim, et al.
Publicado: (2018)

The effect of DNA degradation bias in passive sampling devices on metabarcoding studies of arthropod communities and their associated microbiota
por: Krehenwinkel, Henrik, et al.
Publicado: (2018)

Interlaboratory Validation of a DNA Metabarcoding Assay for Mammalian and Poultry Species to Detect Food Adulteration
por: Dobrovolny, Stefanie, et al.
Publicado: (2022)

Plasmodium vivax molecular diagnostics in community surveys: pitfalls and solutions
por: Gruenberg, Maria, et al.
Publicado: (2018)

Influence of DNA extraction kits on freshwater fungal DNA metabarcoding
por: Matsuoka, Shunsuke, et al.
Publicado: (2022)

Metabarcoding of soil environmental DNA to estimate plant diversity globally
por: Vasar, Martti, et al.
Publicado: (2023)

Errors in aerial survey count data: Identifying pitfalls and solutions
por: Davis, Kayla L., et al.
Publicado: (2022)

Response time as a sole performance indicator in EMS: Pitfalls and solutions
por: Al-Shaqsi, Sultan Zayed Khalifah
Publicado: (2010)

Investigating causality with fecal microbiota transplantation in rodents: applications, recommendations and pitfalls
por: Gheorghe, Cassandra E., et al.
Publicado: (2021)

In vitro human gut microbiota fermentation models: opportunities, challenges, and pitfalls
por: Isenring, Julia, et al.
Publicado: (2023)

The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding
por: Duhamet, Agnès, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_qno13bh9mtt5pogb31giq5m08j