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Single‐cell RNA sequencing in cancer research

Single-cell RNA sequencing (scRNA-seq), a technology that analyzes transcriptomes of complex tissues at single-cell levels, can identify differential gene expression and epigenetic factors caused by mutations in unicellular genomes, as well as new cell-specific markers and cell types. scRNA-seq play...

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Autores principales: Zhang, Yijie, Wang, Dan, Peng, Miao, Tang, Le, Ouyang, Jiawei, Xiong, Fang, Guo, Can, Tang, Yanyan, Zhou, Yujuan, Liao, Qianjin, Wu, Xu, Wang, Hui, Yu, Jianjun, Li, Yong, Li, Xiaoling, Li, Guiyuan, Zeng, Zhaoyang, Tan, Yixin, Xiong, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7919320/
https://www.ncbi.nlm.nih.gov/pubmed/33648534
http://dx.doi.org/10.1186/s13046-021-01874-1
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author Zhang, Yijie
Wang, Dan
Peng, Miao
Tang, Le
Ouyang, Jiawei
Xiong, Fang
Guo, Can
Tang, Yanyan
Zhou, Yujuan
Liao, Qianjin
Wu, Xu
Wang, Hui
Yu, Jianjun
Li, Yong
Li, Xiaoling
Li, Guiyuan
Zeng, Zhaoyang
Tan, Yixin
Xiong, Wei
author_facet Zhang, Yijie
Wang, Dan
Peng, Miao
Tang, Le
Ouyang, Jiawei
Xiong, Fang
Guo, Can
Tang, Yanyan
Zhou, Yujuan
Liao, Qianjin
Wu, Xu
Wang, Hui
Yu, Jianjun
Li, Yong
Li, Xiaoling
Li, Guiyuan
Zeng, Zhaoyang
Tan, Yixin
Xiong, Wei
author_sort Zhang, Yijie
collection PubMed
description Single-cell RNA sequencing (scRNA-seq), a technology that analyzes transcriptomes of complex tissues at single-cell levels, can identify differential gene expression and epigenetic factors caused by mutations in unicellular genomes, as well as new cell-specific markers and cell types. scRNA-seq plays an important role in various aspects of tumor research. It reveals the heterogeneity of tumor cells and monitors the progress of tumor development, thereby preventing further cellular deterioration. Furthermore, the transcriptome analysis of immune cells in tumor tissue can be used to classify immune cells, their immune escape mechanisms and drug resistance mechanisms, and to develop effective clinical targeted therapies combined with immunotherapy. Moreover, this method enables the study of intercellular communication and the interaction of tumor cells and non-malignant cells to reveal their role in carcinogenesis. scRNA-seq provides new technical means for further development of tumor research and is expected to make significant breakthroughs in this field. This review focuses on the principles of scRNA-seq, with an emphasis on the application of scRNA-seq in tumor heterogeneity, pathogenesis, and treatment.
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spelling pubmed-79193202021-03-02 Single‐cell RNA sequencing in cancer research Zhang, Yijie Wang, Dan Peng, Miao Tang, Le Ouyang, Jiawei Xiong, Fang Guo, Can Tang, Yanyan Zhou, Yujuan Liao, Qianjin Wu, Xu Wang, Hui Yu, Jianjun Li, Yong Li, Xiaoling Li, Guiyuan Zeng, Zhaoyang Tan, Yixin Xiong, Wei J Exp Clin Cancer Res Review Single-cell RNA sequencing (scRNA-seq), a technology that analyzes transcriptomes of complex tissues at single-cell levels, can identify differential gene expression and epigenetic factors caused by mutations in unicellular genomes, as well as new cell-specific markers and cell types. scRNA-seq plays an important role in various aspects of tumor research. It reveals the heterogeneity of tumor cells and monitors the progress of tumor development, thereby preventing further cellular deterioration. Furthermore, the transcriptome analysis of immune cells in tumor tissue can be used to classify immune cells, their immune escape mechanisms and drug resistance mechanisms, and to develop effective clinical targeted therapies combined with immunotherapy. Moreover, this method enables the study of intercellular communication and the interaction of tumor cells and non-malignant cells to reveal their role in carcinogenesis. scRNA-seq provides new technical means for further development of tumor research and is expected to make significant breakthroughs in this field. This review focuses on the principles of scRNA-seq, with an emphasis on the application of scRNA-seq in tumor heterogeneity, pathogenesis, and treatment. BioMed Central 2021-03-01 /pmc/articles/PMC7919320/ /pubmed/33648534 http://dx.doi.org/10.1186/s13046-021-01874-1 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Review
Zhang, Yijie
Wang, Dan
Peng, Miao
Tang, Le
Ouyang, Jiawei
Xiong, Fang
Guo, Can
Tang, Yanyan
Zhou, Yujuan
Liao, Qianjin
Wu, Xu
Wang, Hui
Yu, Jianjun
Li, Yong
Li, Xiaoling
Li, Guiyuan
Zeng, Zhaoyang
Tan, Yixin
Xiong, Wei
Single‐cell RNA sequencing in cancer research
title Single‐cell RNA sequencing in cancer research
title_full Single‐cell RNA sequencing in cancer research
title_fullStr Single‐cell RNA sequencing in cancer research
title_full_unstemmed Single‐cell RNA sequencing in cancer research
title_short Single‐cell RNA sequencing in cancer research
title_sort single‐cell rna sequencing in cancer research
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7919320/
https://www.ncbi.nlm.nih.gov/pubmed/33648534
http://dx.doi.org/10.1186/s13046-021-01874-1
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