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Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform
OBJECTIVES: This paper proposes a method for computer-assisted diagnosis of coronavirus disease 2019 (COVID-19) through chest X-ray imaging using a deep learning model without writing a single line of code using the Konstanz Information Miner (KNIME) analytics platform. METHODS: We obtained 155 samp...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Society of Medical Informatics
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7921566/ https://www.ncbi.nlm.nih.gov/pubmed/33611880 http://dx.doi.org/10.4258/hir.2021.27.1.82 |
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author | An, Jun Young Seo, Hoseok Kim, Young-Gon Lee, Kyu Eun Kim, Sungwan Kong, Hyoun-Joong |
author_facet | An, Jun Young Seo, Hoseok Kim, Young-Gon Lee, Kyu Eun Kim, Sungwan Kong, Hyoun-Joong |
author_sort | An, Jun Young |
collection | PubMed |
description | OBJECTIVES: This paper proposes a method for computer-assisted diagnosis of coronavirus disease 2019 (COVID-19) through chest X-ray imaging using a deep learning model without writing a single line of code using the Konstanz Information Miner (KNIME) analytics platform. METHODS: We obtained 155 samples of posteroanterior chest X-ray images from COVID-19 open dataset repositories to develop a classification model using a simple convolutional neural network (CNN). All of the images contained diagnostic information for COVID-19 and other diseases. The model would classify whether a patient was infected with COVID-19 or not. Eighty percent of the images were used for model training, and the rest were used for testing. The graphic user interface-based programming in the KNIME enabled class label annotation, data preprocessing, CNN model training and testing, performance evaluation, and so on. RESULTS: 1,000 epochs training were performed to test the simple CNN model. The lower and upper bounds of positive predictive value (precision), sensitivity (recall), specificity, and f-measure are 92.3% and 94.4%. Both bounds of the model’s accuracies were equal to 93.5% and 96.6% of the area under the receiver operating characteristic curve for the test set. CONCLUSIONS: In this study, a researcher who does not have basic knowledge of python programming successfully performed deep learning analysis of chest x-ray image dataset using the KNIME independently. The KNIME will reduce the time spent and lower the threshold for deep learning research applied to healthcare. |
format | Online Article Text |
id | pubmed-7921566 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Korean Society of Medical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-79215662021-03-04 Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform An, Jun Young Seo, Hoseok Kim, Young-Gon Lee, Kyu Eun Kim, Sungwan Kong, Hyoun-Joong Healthc Inform Res Tutorial OBJECTIVES: This paper proposes a method for computer-assisted diagnosis of coronavirus disease 2019 (COVID-19) through chest X-ray imaging using a deep learning model without writing a single line of code using the Konstanz Information Miner (KNIME) analytics platform. METHODS: We obtained 155 samples of posteroanterior chest X-ray images from COVID-19 open dataset repositories to develop a classification model using a simple convolutional neural network (CNN). All of the images contained diagnostic information for COVID-19 and other diseases. The model would classify whether a patient was infected with COVID-19 or not. Eighty percent of the images were used for model training, and the rest were used for testing. The graphic user interface-based programming in the KNIME enabled class label annotation, data preprocessing, CNN model training and testing, performance evaluation, and so on. RESULTS: 1,000 epochs training were performed to test the simple CNN model. The lower and upper bounds of positive predictive value (precision), sensitivity (recall), specificity, and f-measure are 92.3% and 94.4%. Both bounds of the model’s accuracies were equal to 93.5% and 96.6% of the area under the receiver operating characteristic curve for the test set. CONCLUSIONS: In this study, a researcher who does not have basic knowledge of python programming successfully performed deep learning analysis of chest x-ray image dataset using the KNIME independently. The KNIME will reduce the time spent and lower the threshold for deep learning research applied to healthcare. Korean Society of Medical Informatics 2021-01 2021-01-31 /pmc/articles/PMC7921566/ /pubmed/33611880 http://dx.doi.org/10.4258/hir.2021.27.1.82 Text en © 2021 The Korean Society of Medical Informatics This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Tutorial An, Jun Young Seo, Hoseok Kim, Young-Gon Lee, Kyu Eun Kim, Sungwan Kong, Hyoun-Joong Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title | Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title_full | Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title_fullStr | Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title_full_unstemmed | Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title_short | Codeless Deep Learning of COVID-19 Chest X-Ray Image Dataset with KNIME Analytics Platform |
title_sort | codeless deep learning of covid-19 chest x-ray image dataset with knime analytics platform |
topic | Tutorial |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7921566/ https://www.ncbi.nlm.nih.gov/pubmed/33611880 http://dx.doi.org/10.4258/hir.2021.27.1.82 |
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