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A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution

Colon carcinoma is one of the leading causes of cancer-related death in both men and women. Automatic colorectal polyp segmentation and detection in colonoscopy videos help endoscopists to identify colorectal disease more easily, making it a promising method to prevent colon cancer. In this study, w...

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Detalles Bibliográficos
Autores principales: Safarov, Sirojbek, Whangbo, Taeg Keun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7922083/
https://www.ncbi.nlm.nih.gov/pubmed/33669539
http://dx.doi.org/10.3390/s21041441
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author Safarov, Sirojbek
Whangbo, Taeg Keun
author_facet Safarov, Sirojbek
Whangbo, Taeg Keun
author_sort Safarov, Sirojbek
collection PubMed
description Colon carcinoma is one of the leading causes of cancer-related death in both men and women. Automatic colorectal polyp segmentation and detection in colonoscopy videos help endoscopists to identify colorectal disease more easily, making it a promising method to prevent colon cancer. In this study, we developed a fully automated pixel-wise polyp segmentation model named A-DenseUNet. The proposed architecture adapts different datasets, adjusting for the unknown depth of the network by sharing multiscale encoding information to the different levels of the decoder side. We also used multiple dilated convolutions with various atrous rates to observe a large field of view without increasing the computational cost and prevent loss of spatial information, which would cause dimensionality reduction. We utilized an attention mechanism to remove noise and inappropriate information, leading to the comprehensive re-establishment of contextual features. Our experiments demonstrated that the proposed architecture achieved significant segmentation results on public datasets. A-DenseUNet achieved a 90% Dice coefficient score on the Kvasir-SEG dataset and a 91% Dice coefficient score on the CVC-612 dataset, both of which were higher than the scores of other deep learning models such as UNet++, ResUNet, U-Net, PraNet, and ResUNet++ for segmenting polyps in colonoscopy images.
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spelling pubmed-79220832021-03-03 A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution Safarov, Sirojbek Whangbo, Taeg Keun Sensors (Basel) Article Colon carcinoma is one of the leading causes of cancer-related death in both men and women. Automatic colorectal polyp segmentation and detection in colonoscopy videos help endoscopists to identify colorectal disease more easily, making it a promising method to prevent colon cancer. In this study, we developed a fully automated pixel-wise polyp segmentation model named A-DenseUNet. The proposed architecture adapts different datasets, adjusting for the unknown depth of the network by sharing multiscale encoding information to the different levels of the decoder side. We also used multiple dilated convolutions with various atrous rates to observe a large field of view without increasing the computational cost and prevent loss of spatial information, which would cause dimensionality reduction. We utilized an attention mechanism to remove noise and inappropriate information, leading to the comprehensive re-establishment of contextual features. Our experiments demonstrated that the proposed architecture achieved significant segmentation results on public datasets. A-DenseUNet achieved a 90% Dice coefficient score on the Kvasir-SEG dataset and a 91% Dice coefficient score on the CVC-612 dataset, both of which were higher than the scores of other deep learning models such as UNet++, ResUNet, U-Net, PraNet, and ResUNet++ for segmenting polyps in colonoscopy images. MDPI 2021-02-19 /pmc/articles/PMC7922083/ /pubmed/33669539 http://dx.doi.org/10.3390/s21041441 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Safarov, Sirojbek
Whangbo, Taeg Keun
A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title_full A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title_fullStr A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title_full_unstemmed A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title_short A-DenseUNet: Adaptive Densely Connected UNet for Polyp Segmentation in Colonoscopy Images with Atrous Convolution
title_sort a-denseunet: adaptive densely connected unet for polyp segmentation in colonoscopy images with atrous convolution
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7922083/
https://www.ncbi.nlm.nih.gov/pubmed/33669539
http://dx.doi.org/10.3390/s21041441
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