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Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma

The incidence and mortality rates of lung cancers are different between females and males. Therefore, sex information should be an important part of how to train and optimize a diagnostic model. However, most of the existing studies do not fully utilize this information. This study carried out a com...

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Autores principales: Liu, Quewang, Wang, Yueying, Duan, Meiyu, Fan, Yusi, Pan, Xingyuan, Liu, Shuai, Yu, Qiong, Huang, Lan, Zhou, Fengfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7922551/
https://www.ncbi.nlm.nih.gov/pubmed/33669819
http://dx.doi.org/10.3390/diagnostics11020347
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author Liu, Quewang
Wang, Yueying
Duan, Meiyu
Fan, Yusi
Pan, Xingyuan
Liu, Shuai
Yu, Qiong
Huang, Lan
Zhou, Fengfeng
author_facet Liu, Quewang
Wang, Yueying
Duan, Meiyu
Fan, Yusi
Pan, Xingyuan
Liu, Shuai
Yu, Qiong
Huang, Lan
Zhou, Fengfeng
author_sort Liu, Quewang
collection PubMed
description The incidence and mortality rates of lung cancers are different between females and males. Therefore, sex information should be an important part of how to train and optimize a diagnostic model. However, most of the existing studies do not fully utilize this information. This study carried out a comparative investigation between sex-specific models and sex-independent models. Three feature selection algorithms and five classifiers were utilized to evaluate the contribution of the sex information to the detection of early-stage lung cancers. Both lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) showed that the sex-specific models outperformed the sex-independent detection of early-stage lung cancers. The Venn plots suggested that females and males shared only a few transcriptomic biomarkers of early-stage lung cancers. Our experimental data suggested that sex information should be included in optimizing disease diagnosis models.
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spelling pubmed-79225512021-03-03 Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma Liu, Quewang Wang, Yueying Duan, Meiyu Fan, Yusi Pan, Xingyuan Liu, Shuai Yu, Qiong Huang, Lan Zhou, Fengfeng Diagnostics (Basel) Technical Note The incidence and mortality rates of lung cancers are different between females and males. Therefore, sex information should be an important part of how to train and optimize a diagnostic model. However, most of the existing studies do not fully utilize this information. This study carried out a comparative investigation between sex-specific models and sex-independent models. Three feature selection algorithms and five classifiers were utilized to evaluate the contribution of the sex information to the detection of early-stage lung cancers. Both lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) showed that the sex-specific models outperformed the sex-independent detection of early-stage lung cancers. The Venn plots suggested that females and males shared only a few transcriptomic biomarkers of early-stage lung cancers. Our experimental data suggested that sex information should be included in optimizing disease diagnosis models. MDPI 2021-02-19 /pmc/articles/PMC7922551/ /pubmed/33669819 http://dx.doi.org/10.3390/diagnostics11020347 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Technical Note
Liu, Quewang
Wang, Yueying
Duan, Meiyu
Fan, Yusi
Pan, Xingyuan
Liu, Shuai
Yu, Qiong
Huang, Lan
Zhou, Fengfeng
Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title_full Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title_fullStr Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title_full_unstemmed Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title_short Females and Males Show Differences in Early-Stage Transcriptomic Biomarkers of Lung Adenocarcinoma and Lung Squamous Cell Carcinoma
title_sort females and males show differences in early-stage transcriptomic biomarkers of lung adenocarcinoma and lung squamous cell carcinoma
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7922551/
https://www.ncbi.nlm.nih.gov/pubmed/33669819
http://dx.doi.org/10.3390/diagnostics11020347
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