Cargando…
The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer type...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7925901/ https://www.ncbi.nlm.nih.gov/pubmed/33679868 http://dx.doi.org/10.3389/fgene.2020.609405 |
_version_ | 1783659352662474752 |
---|---|
author | Cheng, Yong Zhang, Yanxiang Yuan, Yuwei Wang, Jiao Liu, Ke Yu, Bin Xie, Li Ou-Yang, Chao Wu, Lin Ye, Xiaoqun |
author_facet | Cheng, Yong Zhang, Yanxiang Yuan, Yuwei Wang, Jiao Liu, Ke Yu, Bin Xie, Li Ou-Yang, Chao Wu, Lin Ye, Xiaoqun |
author_sort | Cheng, Yong |
collection | PubMed |
description | The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer types, while fewer studies assessed the relationship between TMB level and clinical features and outcomes of lung ASC. Herein, the present study enrolled Chinese patients with lung ASC. DNA was extracted from formalin-fixed paraffin-embedded tumor samples and subjected to next generation sequencing (NGS), and the 457 cancer related genes were evaluated. The results demonstrated that 95 unique genes with somatic variations were identified in the enrolled patients. The top three of high frequency gene mutations were TP53, EGFR, PIK3CA with rates of 62% (13 cases), 48% (10 cases), and 14% (3 cases), respectively. We identified TMB value was significantly correlated with pathological stages (p < 0.05) and invasion of lymph node (p < 0.05). However, TMB value was not significantly correlated to other clinicopathologic indexes, for examples, age, sex, smoking history, tumor size, as well as TP53 and EGFR mutations in lung ASC. Moreover, TMB value was associated with the overall survival (p < 0.01), but not with the relapse-free survival (p = 0.23). In conclusion, this study indicated that lung ASC with high TMB might be associated with the invasion of lymph node and short overall survival. Immunotherapy might be a promising treatment option for lung ASC patients with high TMB. |
format | Online Article Text |
id | pubmed-7925901 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79259012021-03-04 The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma Cheng, Yong Zhang, Yanxiang Yuan, Yuwei Wang, Jiao Liu, Ke Yu, Bin Xie, Li Ou-Yang, Chao Wu, Lin Ye, Xiaoqun Front Genet Genetics The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer types, while fewer studies assessed the relationship between TMB level and clinical features and outcomes of lung ASC. Herein, the present study enrolled Chinese patients with lung ASC. DNA was extracted from formalin-fixed paraffin-embedded tumor samples and subjected to next generation sequencing (NGS), and the 457 cancer related genes were evaluated. The results demonstrated that 95 unique genes with somatic variations were identified in the enrolled patients. The top three of high frequency gene mutations were TP53, EGFR, PIK3CA with rates of 62% (13 cases), 48% (10 cases), and 14% (3 cases), respectively. We identified TMB value was significantly correlated with pathological stages (p < 0.05) and invasion of lymph node (p < 0.05). However, TMB value was not significantly correlated to other clinicopathologic indexes, for examples, age, sex, smoking history, tumor size, as well as TP53 and EGFR mutations in lung ASC. Moreover, TMB value was associated with the overall survival (p < 0.01), but not with the relapse-free survival (p = 0.23). In conclusion, this study indicated that lung ASC with high TMB might be associated with the invasion of lymph node and short overall survival. Immunotherapy might be a promising treatment option for lung ASC patients with high TMB. Frontiers Media S.A. 2021-02-17 /pmc/articles/PMC7925901/ /pubmed/33679868 http://dx.doi.org/10.3389/fgene.2020.609405 Text en Copyright © 2021 Cheng, Zhang, Yuan, Wang, Liu, Yu, Xie, Ou-Yang, Wu and Ye. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Cheng, Yong Zhang, Yanxiang Yuan, Yuwei Wang, Jiao Liu, Ke Yu, Bin Xie, Li Ou-Yang, Chao Wu, Lin Ye, Xiaoqun The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title | The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title_full | The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title_fullStr | The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title_full_unstemmed | The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title_short | The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma |
title_sort | comprehensive analyses of genomic variations and assessment of tmb and pd-l1 expression in chinese lung adenosquamous carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7925901/ https://www.ncbi.nlm.nih.gov/pubmed/33679868 http://dx.doi.org/10.3389/fgene.2020.609405 |
work_keys_str_mv | AT chengyong thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT zhangyanxiang thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yuanyuwei thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT wangjiao thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT liuke thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yubin thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT xieli thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT ouyangchao thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT wulin thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yexiaoqun thecomprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT chengyong comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT zhangyanxiang comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yuanyuwei comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT wangjiao comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT liuke comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yubin comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT xieli comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT ouyangchao comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT wulin comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma AT yexiaoqun comprehensiveanalysesofgenomicvariationsandassessmentoftmbandpdl1expressioninchineselungadenosquamouscarcinoma |