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The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma

The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer type...

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Autores principales: Cheng, Yong, Zhang, Yanxiang, Yuan, Yuwei, Wang, Jiao, Liu, Ke, Yu, Bin, Xie, Li, Ou-Yang, Chao, Wu, Lin, Ye, Xiaoqun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7925901/
https://www.ncbi.nlm.nih.gov/pubmed/33679868
http://dx.doi.org/10.3389/fgene.2020.609405
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author Cheng, Yong
Zhang, Yanxiang
Yuan, Yuwei
Wang, Jiao
Liu, Ke
Yu, Bin
Xie, Li
Ou-Yang, Chao
Wu, Lin
Ye, Xiaoqun
author_facet Cheng, Yong
Zhang, Yanxiang
Yuan, Yuwei
Wang, Jiao
Liu, Ke
Yu, Bin
Xie, Li
Ou-Yang, Chao
Wu, Lin
Ye, Xiaoqun
author_sort Cheng, Yong
collection PubMed
description The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer types, while fewer studies assessed the relationship between TMB level and clinical features and outcomes of lung ASC. Herein, the present study enrolled Chinese patients with lung ASC. DNA was extracted from formalin-fixed paraffin-embedded tumor samples and subjected to next generation sequencing (NGS), and the 457 cancer related genes were evaluated. The results demonstrated that 95 unique genes with somatic variations were identified in the enrolled patients. The top three of high frequency gene mutations were TP53, EGFR, PIK3CA with rates of 62% (13 cases), 48% (10 cases), and 14% (3 cases), respectively. We identified TMB value was significantly correlated with pathological stages (p < 0.05) and invasion of lymph node (p < 0.05). However, TMB value was not significantly correlated to other clinicopathologic indexes, for examples, age, sex, smoking history, tumor size, as well as TP53 and EGFR mutations in lung ASC. Moreover, TMB value was associated with the overall survival (p < 0.01), but not with the relapse-free survival (p = 0.23). In conclusion, this study indicated that lung ASC with high TMB might be associated with the invasion of lymph node and short overall survival. Immunotherapy might be a promising treatment option for lung ASC patients with high TMB.
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spelling pubmed-79259012021-03-04 The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma Cheng, Yong Zhang, Yanxiang Yuan, Yuwei Wang, Jiao Liu, Ke Yu, Bin Xie, Li Ou-Yang, Chao Wu, Lin Ye, Xiaoqun Front Genet Genetics The poor prognosis and fewer treatment option is a current clinical challenge for patients with lung adenosquamous carcinoma (ASC). The previous studies reported that tumor mutational burden (TMB, numbers of mutation per Megabase) is a predictor of clinical response in trials of multiple cancer types, while fewer studies assessed the relationship between TMB level and clinical features and outcomes of lung ASC. Herein, the present study enrolled Chinese patients with lung ASC. DNA was extracted from formalin-fixed paraffin-embedded tumor samples and subjected to next generation sequencing (NGS), and the 457 cancer related genes were evaluated. The results demonstrated that 95 unique genes with somatic variations were identified in the enrolled patients. The top three of high frequency gene mutations were TP53, EGFR, PIK3CA with rates of 62% (13 cases), 48% (10 cases), and 14% (3 cases), respectively. We identified TMB value was significantly correlated with pathological stages (p < 0.05) and invasion of lymph node (p < 0.05). However, TMB value was not significantly correlated to other clinicopathologic indexes, for examples, age, sex, smoking history, tumor size, as well as TP53 and EGFR mutations in lung ASC. Moreover, TMB value was associated with the overall survival (p < 0.01), but not with the relapse-free survival (p = 0.23). In conclusion, this study indicated that lung ASC with high TMB might be associated with the invasion of lymph node and short overall survival. Immunotherapy might be a promising treatment option for lung ASC patients with high TMB. Frontiers Media S.A. 2021-02-17 /pmc/articles/PMC7925901/ /pubmed/33679868 http://dx.doi.org/10.3389/fgene.2020.609405 Text en Copyright © 2021 Cheng, Zhang, Yuan, Wang, Liu, Yu, Xie, Ou-Yang, Wu and Ye. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Cheng, Yong
Zhang, Yanxiang
Yuan, Yuwei
Wang, Jiao
Liu, Ke
Yu, Bin
Xie, Li
Ou-Yang, Chao
Wu, Lin
Ye, Xiaoqun
The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title_full The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title_fullStr The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title_full_unstemmed The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title_short The Comprehensive Analyses of Genomic Variations and Assessment of TMB and PD-L1 Expression in Chinese Lung Adenosquamous Carcinoma
title_sort comprehensive analyses of genomic variations and assessment of tmb and pd-l1 expression in chinese lung adenosquamous carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7925901/
https://www.ncbi.nlm.nih.gov/pubmed/33679868
http://dx.doi.org/10.3389/fgene.2020.609405
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