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Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment

Although all cancers are molecularly distinct, many share common driver mutations. Pan-cancer analysis, utilizes next-generation sequencing (NGS), pan-cancer model systems, and pan-cancer projects such as The Cancer Genome Atlas (TCGA), to assess frequently mutated genes and other genomic abnormalit...

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Autores principales: Zhang, Xianwen, Lai, Han, Zhang, Fan, Wang, Yixi, Zhang, Li, Yang, Ni, Wang, Chunrong, Liang, Zheng, Zeng, Jieping, Yang, Jinrong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7926202/
https://www.ncbi.nlm.nih.gov/pubmed/33681260
http://dx.doi.org/10.3389/fmed.2021.635035
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author Zhang, Xianwen
Lai, Han
Zhang, Fan
Wang, Yixi
Zhang, Li
Yang, Ni
Wang, Chunrong
Liang, Zheng
Zeng, Jieping
Yang, Jinrong
author_facet Zhang, Xianwen
Lai, Han
Zhang, Fan
Wang, Yixi
Zhang, Li
Yang, Ni
Wang, Chunrong
Liang, Zheng
Zeng, Jieping
Yang, Jinrong
author_sort Zhang, Xianwen
collection PubMed
description Although all cancers are molecularly distinct, many share common driver mutations. Pan-cancer analysis, utilizes next-generation sequencing (NGS), pan-cancer model systems, and pan-cancer projects such as The Cancer Genome Atlas (TCGA), to assess frequently mutated genes and other genomic abnormalities that are common among many cancer types, regardless of the tumor origin, providing new directions for tumor biology research. However, there is currently no study that has objectively analyzed the results of pan-cancer studies on cancer biology. For this study, 999 articles on pan-cancer published from 2006 to 2020 were obtained from the Scopus database, and bibliometric methods were used to analyze citations, international cooperation, co-authorship and keyword co-occurrence clusters. Furthermore, we also focused on and summarized the application of pan-cancer in breast cancer. Our result shows that the pan-cancer studies were first published in 2006 and entered a period of rapid development after 2013. So far, 86 countries have carried out international cooperation in sharing research. Researchers form the United States and Canada have published the most articles and have made the most extensive contribution to this field, respectively. Through author keyword analysis of the 999 articles, TCGA, biomarkers, NGS, immunotherapy, DNA methylation, prognosis, and several other keywords appear frequently, and these terms are hot spots in pan-cancer studies. There are four subtypes of breast cancer (luminalA, luminalB, HER2, and basal-like) according to pan-cancer analysis of breast cancer. Meanwhile, it was found that breast cancer has genetic similarity to pan-gynecological cancers, such as ovarian cancer, which indicates related etiology and possibly similar treatments. Collectively, with the emergence of new detection methods, new cancer databases, and the involvement of more researchers, pan-cancer analyses will play a greater role in cancer biology research.
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spelling pubmed-79262022021-03-04 Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment Zhang, Xianwen Lai, Han Zhang, Fan Wang, Yixi Zhang, Li Yang, Ni Wang, Chunrong Liang, Zheng Zeng, Jieping Yang, Jinrong Front Med (Lausanne) Medicine Although all cancers are molecularly distinct, many share common driver mutations. Pan-cancer analysis, utilizes next-generation sequencing (NGS), pan-cancer model systems, and pan-cancer projects such as The Cancer Genome Atlas (TCGA), to assess frequently mutated genes and other genomic abnormalities that are common among many cancer types, regardless of the tumor origin, providing new directions for tumor biology research. However, there is currently no study that has objectively analyzed the results of pan-cancer studies on cancer biology. For this study, 999 articles on pan-cancer published from 2006 to 2020 were obtained from the Scopus database, and bibliometric methods were used to analyze citations, international cooperation, co-authorship and keyword co-occurrence clusters. Furthermore, we also focused on and summarized the application of pan-cancer in breast cancer. Our result shows that the pan-cancer studies were first published in 2006 and entered a period of rapid development after 2013. So far, 86 countries have carried out international cooperation in sharing research. Researchers form the United States and Canada have published the most articles and have made the most extensive contribution to this field, respectively. Through author keyword analysis of the 999 articles, TCGA, biomarkers, NGS, immunotherapy, DNA methylation, prognosis, and several other keywords appear frequently, and these terms are hot spots in pan-cancer studies. There are four subtypes of breast cancer (luminalA, luminalB, HER2, and basal-like) according to pan-cancer analysis of breast cancer. Meanwhile, it was found that breast cancer has genetic similarity to pan-gynecological cancers, such as ovarian cancer, which indicates related etiology and possibly similar treatments. Collectively, with the emergence of new detection methods, new cancer databases, and the involvement of more researchers, pan-cancer analyses will play a greater role in cancer biology research. Frontiers Media S.A. 2021-02-17 /pmc/articles/PMC7926202/ /pubmed/33681260 http://dx.doi.org/10.3389/fmed.2021.635035 Text en Copyright © 2021 Zhang, Lai, Zhang, Wang, Zhang, Yang, Wang, Liang, Zeng and Yang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Zhang, Xianwen
Lai, Han
Zhang, Fan
Wang, Yixi
Zhang, Li
Yang, Ni
Wang, Chunrong
Liang, Zheng
Zeng, Jieping
Yang, Jinrong
Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title_full Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title_fullStr Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title_full_unstemmed Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title_short Visualization and Analysis in the Field of Pan-Cancer Studies and Its Application in Breast Cancer Treatment
title_sort visualization and analysis in the field of pan-cancer studies and its application in breast cancer treatment
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7926202/
https://www.ncbi.nlm.nih.gov/pubmed/33681260
http://dx.doi.org/10.3389/fmed.2021.635035
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