Cargando…
Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding re...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927037/ https://www.ncbi.nlm.nih.gov/pubmed/33671795 http://dx.doi.org/10.3390/genes12020310 |
_version_ | 1783659600563666944 |
---|---|
author | Liu, Yichuan Chang, Xiao Qu, Hui-Qi Tian, Lifeng Glessner, Joseph Qu, Jingchun Li, Dong Qiu, Haijun Sleiman, Patrick Hakonarson, Hakon |
author_facet | Liu, Yichuan Chang, Xiao Qu, Hui-Qi Tian, Lifeng Glessner, Joseph Qu, Jingchun Li, Dong Qiu, Haijun Sleiman, Patrick Hakonarson, Hakon |
author_sort | Liu, Yichuan |
collection | PubMed |
description | Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. Multiple novel rare recurrent variants were identified in exonic regions, functionally classified as stop-gains and frameshifts for known ADHD genes. Deletion in introns of the protocadherins families and the ncRNA HGB8P were identified in two independent EA ADHD patients. A meta-analysis of the two ethnicities for differential ADHD recurrent variants compared to controls shows a small number of overlaps. These results suggest that rare recurrent variants in noncoding regions may be involved in the pathogenesis of ADHD in children of both AA and EA ancestry; thus, WGS could be a powerful discovery tool for studying the molecular mechanisms of ADHD. |
format | Online Article Text |
id | pubmed-7927037 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-79270372021-03-04 Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry Liu, Yichuan Chang, Xiao Qu, Hui-Qi Tian, Lifeng Glessner, Joseph Qu, Jingchun Li, Dong Qiu, Haijun Sleiman, Patrick Hakonarson, Hakon Genes (Basel) Article Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. Multiple novel rare recurrent variants were identified in exonic regions, functionally classified as stop-gains and frameshifts for known ADHD genes. Deletion in introns of the protocadherins families and the ncRNA HGB8P were identified in two independent EA ADHD patients. A meta-analysis of the two ethnicities for differential ADHD recurrent variants compared to controls shows a small number of overlaps. These results suggest that rare recurrent variants in noncoding regions may be involved in the pathogenesis of ADHD in children of both AA and EA ancestry; thus, WGS could be a powerful discovery tool for studying the molecular mechanisms of ADHD. MDPI 2021-02-22 /pmc/articles/PMC7927037/ /pubmed/33671795 http://dx.doi.org/10.3390/genes12020310 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Liu, Yichuan Chang, Xiao Qu, Hui-Qi Tian, Lifeng Glessner, Joseph Qu, Jingchun Li, Dong Qiu, Haijun Sleiman, Patrick Hakonarson, Hakon Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title | Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title_full | Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title_fullStr | Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title_full_unstemmed | Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title_short | Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry |
title_sort | rare recurrent variants in noncoding regions impact attention-deficit hyperactivity disorder (adhd) gene networks in children of both african american and european american ancestry |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927037/ https://www.ncbi.nlm.nih.gov/pubmed/33671795 http://dx.doi.org/10.3390/genes12020310 |
work_keys_str_mv | AT liuyichuan rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT changxiao rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT quhuiqi rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT tianlifeng rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT glessnerjoseph rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT qujingchun rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT lidong rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT qiuhaijun rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT sleimanpatrick rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry AT hakonarsonhakon rarerecurrentvariantsinnoncodingregionsimpactattentiondeficithyperactivitydisorderadhdgenenetworksinchildrenofbothafricanamericanandeuropeanamericanancestry |