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Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry

Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding re...

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Autores principales: Liu, Yichuan, Chang, Xiao, Qu, Hui-Qi, Tian, Lifeng, Glessner, Joseph, Qu, Jingchun, Li, Dong, Qiu, Haijun, Sleiman, Patrick, Hakonarson, Hakon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927037/
https://www.ncbi.nlm.nih.gov/pubmed/33671795
http://dx.doi.org/10.3390/genes12020310
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author Liu, Yichuan
Chang, Xiao
Qu, Hui-Qi
Tian, Lifeng
Glessner, Joseph
Qu, Jingchun
Li, Dong
Qiu, Haijun
Sleiman, Patrick
Hakonarson, Hakon
author_facet Liu, Yichuan
Chang, Xiao
Qu, Hui-Qi
Tian, Lifeng
Glessner, Joseph
Qu, Jingchun
Li, Dong
Qiu, Haijun
Sleiman, Patrick
Hakonarson, Hakon
author_sort Liu, Yichuan
collection PubMed
description Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. Multiple novel rare recurrent variants were identified in exonic regions, functionally classified as stop-gains and frameshifts for known ADHD genes. Deletion in introns of the protocadherins families and the ncRNA HGB8P were identified in two independent EA ADHD patients. A meta-analysis of the two ethnicities for differential ADHD recurrent variants compared to controls shows a small number of overlaps. These results suggest that rare recurrent variants in noncoding regions may be involved in the pathogenesis of ADHD in children of both AA and EA ancestry; thus, WGS could be a powerful discovery tool for studying the molecular mechanisms of ADHD.
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spelling pubmed-79270372021-03-04 Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry Liu, Yichuan Chang, Xiao Qu, Hui-Qi Tian, Lifeng Glessner, Joseph Qu, Jingchun Li, Dong Qiu, Haijun Sleiman, Patrick Hakonarson, Hakon Genes (Basel) Article Attention-deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder with poorly understood molecular mechanisms that results in significant impairment in children. In this study, we sought to assess the role of rare recurrent variants in non-European populations and outside of coding regions. We generated whole genome sequence (WGS) data on 875 individuals, including 205 ADHD cases and 670 non-ADHD controls. The cases included 116 African Americans (AA) and 89 European Americans (EA), and the controls included 408 AA and 262 EA. Multiple novel rare recurrent variants were identified in exonic regions, functionally classified as stop-gains and frameshifts for known ADHD genes. Deletion in introns of the protocadherins families and the ncRNA HGB8P were identified in two independent EA ADHD patients. A meta-analysis of the two ethnicities for differential ADHD recurrent variants compared to controls shows a small number of overlaps. These results suggest that rare recurrent variants in noncoding regions may be involved in the pathogenesis of ADHD in children of both AA and EA ancestry; thus, WGS could be a powerful discovery tool for studying the molecular mechanisms of ADHD. MDPI 2021-02-22 /pmc/articles/PMC7927037/ /pubmed/33671795 http://dx.doi.org/10.3390/genes12020310 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Liu, Yichuan
Chang, Xiao
Qu, Hui-Qi
Tian, Lifeng
Glessner, Joseph
Qu, Jingchun
Li, Dong
Qiu, Haijun
Sleiman, Patrick
Hakonarson, Hakon
Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title_full Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title_fullStr Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title_full_unstemmed Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title_short Rare Recurrent Variants in Noncoding Regions Impact Attention-Deficit Hyperactivity Disorder (ADHD) Gene Networks in Children of both African American and European American Ancestry
title_sort rare recurrent variants in noncoding regions impact attention-deficit hyperactivity disorder (adhd) gene networks in children of both african american and european american ancestry
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927037/
https://www.ncbi.nlm.nih.gov/pubmed/33671795
http://dx.doi.org/10.3390/genes12020310
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