Cargando…
What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundnes...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927948/ https://www.ncbi.nlm.nih.gov/pubmed/33600347 http://dx.doi.org/10.2196/22219 |
_version_ | 1783659764451901440 |
---|---|
author | Kohane, Isaac S Aronow, Bruce J Avillach, Paul Beaulieu-Jones, Brett K Bellazzi, Riccardo Bradford, Robert L Brat, Gabriel A Cannataro, Mario Cimino, James J García-Barrio, Noelia Gehlenborg, Nils Ghassemi, Marzyeh Gutiérrez-Sacristán, Alba Hanauer, David A Holmes, John H Hong, Chuan Klann, Jeffrey G Loh, Ne Hooi Will Luo, Yuan Mandl, Kenneth D Daniar, Mohamad Moore, Jason H Murphy, Shawn N Neuraz, Antoine Ngiam, Kee Yuan Omenn, Gilbert S Palmer, Nathan Patel, Lav P Pedrera-Jiménez, Miguel Sliz, Piotr South, Andrew M Tan, Amelia Li Min Taylor, Deanne M Taylor, Bradley W Torti, Carlo Vallejos, Andrew K Wagholikar, Kavishwar B Weber, Griffin M Cai, Tianxi |
author_facet | Kohane, Isaac S Aronow, Bruce J Avillach, Paul Beaulieu-Jones, Brett K Bellazzi, Riccardo Bradford, Robert L Brat, Gabriel A Cannataro, Mario Cimino, James J García-Barrio, Noelia Gehlenborg, Nils Ghassemi, Marzyeh Gutiérrez-Sacristán, Alba Hanauer, David A Holmes, John H Hong, Chuan Klann, Jeffrey G Loh, Ne Hooi Will Luo, Yuan Mandl, Kenneth D Daniar, Mohamad Moore, Jason H Murphy, Shawn N Neuraz, Antoine Ngiam, Kee Yuan Omenn, Gilbert S Palmer, Nathan Patel, Lav P Pedrera-Jiménez, Miguel Sliz, Piotr South, Andrew M Tan, Amelia Li Min Taylor, Deanne M Taylor, Bradley W Torti, Carlo Vallejos, Andrew K Wagholikar, Kavishwar B Weber, Griffin M Cai, Tianxi |
author_sort | Kohane, Isaac S |
collection | PubMed |
description | Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field. |
format | Online Article Text |
id | pubmed-7927948 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-79279482021-03-05 What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask Kohane, Isaac S Aronow, Bruce J Avillach, Paul Beaulieu-Jones, Brett K Bellazzi, Riccardo Bradford, Robert L Brat, Gabriel A Cannataro, Mario Cimino, James J García-Barrio, Noelia Gehlenborg, Nils Ghassemi, Marzyeh Gutiérrez-Sacristán, Alba Hanauer, David A Holmes, John H Hong, Chuan Klann, Jeffrey G Loh, Ne Hooi Will Luo, Yuan Mandl, Kenneth D Daniar, Mohamad Moore, Jason H Murphy, Shawn N Neuraz, Antoine Ngiam, Kee Yuan Omenn, Gilbert S Palmer, Nathan Patel, Lav P Pedrera-Jiménez, Miguel Sliz, Piotr South, Andrew M Tan, Amelia Li Min Taylor, Deanne M Taylor, Bradley W Torti, Carlo Vallejos, Andrew K Wagholikar, Kavishwar B Weber, Griffin M Cai, Tianxi J Med Internet Res Viewpoint Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field. JMIR Publications 2021-03-02 /pmc/articles/PMC7927948/ /pubmed/33600347 http://dx.doi.org/10.2196/22219 Text en ©Isaac S Kohane, Bruce J Aronow, Paul Avillach, Brett K Beaulieu-Jones, Riccardo Bellazzi, Robert L Bradford, Gabriel A Brat, Mario Cannataro, James J Cimino, Noelia García-Barrio, Nils Gehlenborg, Marzyeh Ghassemi, Alba Gutiérrez-Sacristán, David A Hanauer, John H Holmes, Chuan Hong, Jeffrey G Klann, Ne Hooi Will Loh, Yuan Luo, Kenneth D Mandl, Mohamad Daniar, Jason H Moore, Shawn N Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S Omenn, Nathan Palmer, Lav P Patel, Miguel Pedrera-Jiménez, Piotr Sliz, Andrew M South, Amelia Li Min Tan, Deanne M Taylor, Bradley W Taylor, Carlo Torti, Andrew K Vallejos, Kavishwar B Wagholikar, The Consortium For Clinical Characterization Of COVID-19 By EHR (4CE), Griffin M Weber, Tianxi Cai. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 02.03.2021. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on http://www.jmir.org/, as well as this copyright and license information must be included. |
spellingShingle | Viewpoint Kohane, Isaac S Aronow, Bruce J Avillach, Paul Beaulieu-Jones, Brett K Bellazzi, Riccardo Bradford, Robert L Brat, Gabriel A Cannataro, Mario Cimino, James J García-Barrio, Noelia Gehlenborg, Nils Ghassemi, Marzyeh Gutiérrez-Sacristán, Alba Hanauer, David A Holmes, John H Hong, Chuan Klann, Jeffrey G Loh, Ne Hooi Will Luo, Yuan Mandl, Kenneth D Daniar, Mohamad Moore, Jason H Murphy, Shawn N Neuraz, Antoine Ngiam, Kee Yuan Omenn, Gilbert S Palmer, Nathan Patel, Lav P Pedrera-Jiménez, Miguel Sliz, Piotr South, Andrew M Tan, Amelia Li Min Taylor, Deanne M Taylor, Bradley W Torti, Carlo Vallejos, Andrew K Wagholikar, Kavishwar B Weber, Griffin M Cai, Tianxi What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title | What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title_full | What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title_fullStr | What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title_full_unstemmed | What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title_short | What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask |
title_sort | what every reader should know about studies using electronic health record data but may be afraid to ask |
topic | Viewpoint |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927948/ https://www.ncbi.nlm.nih.gov/pubmed/33600347 http://dx.doi.org/10.2196/22219 |
work_keys_str_mv | AT kohaneisaacs whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT aronowbrucej whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT avillachpaul whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT beaulieujonesbrettk whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT bellazziriccardo whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT bradfordrobertl whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT bratgabriela whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT cannataromario whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT ciminojamesj whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT garciabarrionoelia whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT gehlenborgnils whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT ghassemimarzyeh whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT gutierrezsacristanalba whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT hanauerdavida whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT holmesjohnh whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT hongchuan whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT klannjeffreyg whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT lohnehooiwill whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT luoyuan whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT mandlkennethd whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT daniarmohamad whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT moorejasonh whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT murphyshawnn whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT neurazantoine whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT ngiamkeeyuan whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT omenngilberts whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT palmernathan whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT patellavp whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT pedrerajimenezmiguel whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT slizpiotr whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT southandrewm whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT tanamelialimin whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT taylordeannem whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT taylorbradleyw whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT torticarlo whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT vallejosandrewk whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT wagholikarkavishwarb whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT webergriffinm whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask AT caitianxi whateveryreadershouldknowaboutstudiesusingelectronichealthrecorddatabutmaybeafraidtoask |