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What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask

Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundnes...

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Autores principales: Kohane, Isaac S, Aronow, Bruce J, Avillach, Paul, Beaulieu-Jones, Brett K, Bellazzi, Riccardo, Bradford, Robert L, Brat, Gabriel A, Cannataro, Mario, Cimino, James J, García-Barrio, Noelia, Gehlenborg, Nils, Ghassemi, Marzyeh, Gutiérrez-Sacristán, Alba, Hanauer, David A, Holmes, John H, Hong, Chuan, Klann, Jeffrey G, Loh, Ne Hooi Will, Luo, Yuan, Mandl, Kenneth D, Daniar, Mohamad, Moore, Jason H, Murphy, Shawn N, Neuraz, Antoine, Ngiam, Kee Yuan, Omenn, Gilbert S, Palmer, Nathan, Patel, Lav P, Pedrera-Jiménez, Miguel, Sliz, Piotr, South, Andrew M, Tan, Amelia Li Min, Taylor, Deanne M, Taylor, Bradley W, Torti, Carlo, Vallejos, Andrew K, Wagholikar, Kavishwar B, Weber, Griffin M, Cai, Tianxi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927948/
https://www.ncbi.nlm.nih.gov/pubmed/33600347
http://dx.doi.org/10.2196/22219
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author Kohane, Isaac S
Aronow, Bruce J
Avillach, Paul
Beaulieu-Jones, Brett K
Bellazzi, Riccardo
Bradford, Robert L
Brat, Gabriel A
Cannataro, Mario
Cimino, James J
García-Barrio, Noelia
Gehlenborg, Nils
Ghassemi, Marzyeh
Gutiérrez-Sacristán, Alba
Hanauer, David A
Holmes, John H
Hong, Chuan
Klann, Jeffrey G
Loh, Ne Hooi Will
Luo, Yuan
Mandl, Kenneth D
Daniar, Mohamad
Moore, Jason H
Murphy, Shawn N
Neuraz, Antoine
Ngiam, Kee Yuan
Omenn, Gilbert S
Palmer, Nathan
Patel, Lav P
Pedrera-Jiménez, Miguel
Sliz, Piotr
South, Andrew M
Tan, Amelia Li Min
Taylor, Deanne M
Taylor, Bradley W
Torti, Carlo
Vallejos, Andrew K
Wagholikar, Kavishwar B
Weber, Griffin M
Cai, Tianxi
author_facet Kohane, Isaac S
Aronow, Bruce J
Avillach, Paul
Beaulieu-Jones, Brett K
Bellazzi, Riccardo
Bradford, Robert L
Brat, Gabriel A
Cannataro, Mario
Cimino, James J
García-Barrio, Noelia
Gehlenborg, Nils
Ghassemi, Marzyeh
Gutiérrez-Sacristán, Alba
Hanauer, David A
Holmes, John H
Hong, Chuan
Klann, Jeffrey G
Loh, Ne Hooi Will
Luo, Yuan
Mandl, Kenneth D
Daniar, Mohamad
Moore, Jason H
Murphy, Shawn N
Neuraz, Antoine
Ngiam, Kee Yuan
Omenn, Gilbert S
Palmer, Nathan
Patel, Lav P
Pedrera-Jiménez, Miguel
Sliz, Piotr
South, Andrew M
Tan, Amelia Li Min
Taylor, Deanne M
Taylor, Bradley W
Torti, Carlo
Vallejos, Andrew K
Wagholikar, Kavishwar B
Weber, Griffin M
Cai, Tianxi
author_sort Kohane, Isaac S
collection PubMed
description Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field.
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spelling pubmed-79279482021-03-05 What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask Kohane, Isaac S Aronow, Bruce J Avillach, Paul Beaulieu-Jones, Brett K Bellazzi, Riccardo Bradford, Robert L Brat, Gabriel A Cannataro, Mario Cimino, James J García-Barrio, Noelia Gehlenborg, Nils Ghassemi, Marzyeh Gutiérrez-Sacristán, Alba Hanauer, David A Holmes, John H Hong, Chuan Klann, Jeffrey G Loh, Ne Hooi Will Luo, Yuan Mandl, Kenneth D Daniar, Mohamad Moore, Jason H Murphy, Shawn N Neuraz, Antoine Ngiam, Kee Yuan Omenn, Gilbert S Palmer, Nathan Patel, Lav P Pedrera-Jiménez, Miguel Sliz, Piotr South, Andrew M Tan, Amelia Li Min Taylor, Deanne M Taylor, Bradley W Torti, Carlo Vallejos, Andrew K Wagholikar, Kavishwar B Weber, Griffin M Cai, Tianxi J Med Internet Res Viewpoint Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field. JMIR Publications 2021-03-02 /pmc/articles/PMC7927948/ /pubmed/33600347 http://dx.doi.org/10.2196/22219 Text en ©Isaac S Kohane, Bruce J Aronow, Paul Avillach, Brett K Beaulieu-Jones, Riccardo Bellazzi, Robert L Bradford, Gabriel A Brat, Mario Cannataro, James J Cimino, Noelia García-Barrio, Nils Gehlenborg, Marzyeh Ghassemi, Alba Gutiérrez-Sacristán, David A Hanauer, John H Holmes, Chuan Hong, Jeffrey G Klann, Ne Hooi Will Loh, Yuan Luo, Kenneth D Mandl, Mohamad Daniar, Jason H Moore, Shawn N Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S Omenn, Nathan Palmer, Lav P Patel, Miguel Pedrera-Jiménez, Piotr Sliz, Andrew M South, Amelia Li Min Tan, Deanne M Taylor, Bradley W Taylor, Carlo Torti, Andrew K Vallejos, Kavishwar B Wagholikar, The Consortium For Clinical Characterization Of COVID-19 By EHR (4CE), Griffin M Weber, Tianxi Cai. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 02.03.2021. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on http://www.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Viewpoint
Kohane, Isaac S
Aronow, Bruce J
Avillach, Paul
Beaulieu-Jones, Brett K
Bellazzi, Riccardo
Bradford, Robert L
Brat, Gabriel A
Cannataro, Mario
Cimino, James J
García-Barrio, Noelia
Gehlenborg, Nils
Ghassemi, Marzyeh
Gutiérrez-Sacristán, Alba
Hanauer, David A
Holmes, John H
Hong, Chuan
Klann, Jeffrey G
Loh, Ne Hooi Will
Luo, Yuan
Mandl, Kenneth D
Daniar, Mohamad
Moore, Jason H
Murphy, Shawn N
Neuraz, Antoine
Ngiam, Kee Yuan
Omenn, Gilbert S
Palmer, Nathan
Patel, Lav P
Pedrera-Jiménez, Miguel
Sliz, Piotr
South, Andrew M
Tan, Amelia Li Min
Taylor, Deanne M
Taylor, Bradley W
Torti, Carlo
Vallejos, Andrew K
Wagholikar, Kavishwar B
Weber, Griffin M
Cai, Tianxi
What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title_full What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title_fullStr What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title_full_unstemmed What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title_short What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
title_sort what every reader should know about studies using electronic health record data but may be afraid to ask
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927948/
https://www.ncbi.nlm.nih.gov/pubmed/33600347
http://dx.doi.org/10.2196/22219
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