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The complete chloroplast genome of Crateva unilocularis (Capparaceae)
Crateva unilocularis is naturally distributed in Southern China, which is an elite natural tree with high edible and medicinal value. In this study, whole chloroplast (cp) genome of Crateva unilocularis was assembled and characterized on the basis of Illumina pair-end sequencing data. The complete c...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927983/ https://www.ncbi.nlm.nih.gov/pubmed/33763540 http://dx.doi.org/10.1080/23802359.2021.1878949 |
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author | Zheng, Xin-hua Duan, Hua-chao Li, Shi-min Dong, Qiong |
author_facet | Zheng, Xin-hua Duan, Hua-chao Li, Shi-min Dong, Qiong |
author_sort | Zheng, Xin-hua |
collection | PubMed |
description | Crateva unilocularis is naturally distributed in Southern China, which is an elite natural tree with high edible and medicinal value. In this study, whole chloroplast (cp) genome of Crateva unilocularis was assembled and characterized on the basis of Illumina pair-end sequencing data. The complete cp genome was 156,417 bp in length, containing a large single-copy region (LSC) of 85,607 bp and a small single-copy region (SSC) of 18,164 bp, which were separated by a pair of 26,323 bp inverted repeat regions (IRs). The genome contained 128 genes, including 85 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. The overall GC content is 36.32%, while the corresponding values of the LSC, SSC, and IR regions were 33.98, 29.45, and 42.48%, respectively. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Crateva tapia. These findings provide a foundation for further investigation of cp genome evolution in Crateva unilocularis and other higher plants. |
format | Online Article Text |
id | pubmed-7927983 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79279832021-03-23 The complete chloroplast genome of Crateva unilocularis (Capparaceae) Zheng, Xin-hua Duan, Hua-chao Li, Shi-min Dong, Qiong Mitochondrial DNA B Resour Mitogenome Announcement Crateva unilocularis is naturally distributed in Southern China, which is an elite natural tree with high edible and medicinal value. In this study, whole chloroplast (cp) genome of Crateva unilocularis was assembled and characterized on the basis of Illumina pair-end sequencing data. The complete cp genome was 156,417 bp in length, containing a large single-copy region (LSC) of 85,607 bp and a small single-copy region (SSC) of 18,164 bp, which were separated by a pair of 26,323 bp inverted repeat regions (IRs). The genome contained 128 genes, including 85 protein-coding genes, 35 tRNA genes, and 8 rRNA genes. The overall GC content is 36.32%, while the corresponding values of the LSC, SSC, and IR regions were 33.98, 29.45, and 42.48%, respectively. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Crateva tapia. These findings provide a foundation for further investigation of cp genome evolution in Crateva unilocularis and other higher plants. Taylor & Francis 2021-03-01 /pmc/articles/PMC7927983/ /pubmed/33763540 http://dx.doi.org/10.1080/23802359.2021.1878949 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zheng, Xin-hua Duan, Hua-chao Li, Shi-min Dong, Qiong The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title | The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title_full | The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title_fullStr | The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title_full_unstemmed | The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title_short | The complete chloroplast genome of Crateva unilocularis (Capparaceae) |
title_sort | complete chloroplast genome of crateva unilocularis (capparaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7927983/ https://www.ncbi.nlm.nih.gov/pubmed/33763540 http://dx.doi.org/10.1080/23802359.2021.1878949 |
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