Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)

The complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two invert...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Aihong, Hu, Miao, Liu, Tengyun, Liu, Shujuan, Zhou, Hua, Yu, Faxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928189/
https://www.ncbi.nlm.nih.gov/pubmed/33763545
http://dx.doi.org/10.1080/23802359.2021.1881838
_version_ 1783659811582246912
author Yang, Aihong
Hu, Miao
Liu, Tengyun
Liu, Shujuan
Zhou, Hua
Yu, Faxin
author_facet Yang, Aihong
Hu, Miao
Liu, Tengyun
Liu, Shujuan
Zhou, Hua
Yu, Faxin
author_sort Yang, Aihong
collection PubMed
description The complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two inverted repeat (IR) regions of 23,451 bp. A total of 113 unique genes were identified, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on cp genomes of 20 Actinidiaceae species revealed that A. latifolia was evolutionarily close to A. eriantha, A. styracifolia, and A. fulvicoma.
format Online
Article
Text
id pubmed-7928189
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-79281892021-03-23 Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae) Yang, Aihong Hu, Miao Liu, Tengyun Liu, Shujuan Zhou, Hua Yu, Faxin Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome of Actinidia latifolia was sequenced and assembled using Illumina pair-end sequencing data. The cp genome is 157,021 bp in length and comprises a large single copy (LSC) region of 88,557 bp and a small single copy (SSC) region of 21,562 bp separated by two inverted repeat (IR) regions of 23,451 bp. A total of 113 unique genes were identified, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis based on cp genomes of 20 Actinidiaceae species revealed that A. latifolia was evolutionarily close to A. eriantha, A. styracifolia, and A. fulvicoma. Taylor & Francis 2021-03-01 /pmc/articles/PMC7928189/ /pubmed/33763545 http://dx.doi.org/10.1080/23802359.2021.1881838 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Aihong
Hu, Miao
Liu, Tengyun
Liu, Shujuan
Zhou, Hua
Yu, Faxin
Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title_full Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title_fullStr Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title_full_unstemmed Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title_short Characterization and phylogenetic analysis of the complete chloroplast genome of Actinidia latifolia (Actinidiaceae)
title_sort characterization and phylogenetic analysis of the complete chloroplast genome of actinidia latifolia (actinidiaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928189/
https://www.ncbi.nlm.nih.gov/pubmed/33763545
http://dx.doi.org/10.1080/23802359.2021.1881838
work_keys_str_mv AT yangaihong characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae
AT humiao characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae
AT liutengyun characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae
AT liushujuan characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae
AT zhouhua characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae
AT yufaxin characterizationandphylogeneticanalysisofthecompletechloroplastgenomeofactinidialatifoliaactinidiaceae

Ejemplares similares