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Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset
Recently, several deep learning methods have been applied to decoding in task-related fMRI, and their advantages have been exploited in a variety of ways. However, this paradigm is sometimes problematic, due to the difficulty of applying deep learning to high-dimensional data and small sample size c...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928289/ https://www.ncbi.nlm.nih.gov/pubmed/33679360 http://dx.doi.org/10.3389/fninf.2021.577451 |
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author | Yotsutsuji, Sunao Lei, Miaomei Akama, Hiroyuki |
author_facet | Yotsutsuji, Sunao Lei, Miaomei Akama, Hiroyuki |
author_sort | Yotsutsuji, Sunao |
collection | PubMed |
description | Recently, several deep learning methods have been applied to decoding in task-related fMRI, and their advantages have been exploited in a variety of ways. However, this paradigm is sometimes problematic, due to the difficulty of applying deep learning to high-dimensional data and small sample size conditions. The difficulties in gathering a large amount of data to develop predictive machine learning models with multiple layers from fMRI experiments with complicated designs and tasks are well-recognized. Group-level, multi-voxel pattern analysis with small sample sizes results in low statistical power and large accuracy evaluation errors; failure in such instances is ascribed to the individual variability that risks information leakage, a particular issue when dealing with a limited number of subjects. In this study, using a small-size fMRI dataset evaluating bilingual language switch in a property generation task, we evaluated the relative fit of different deep learning models, incorporating moderate split methods to control the amount of information leakage. Our results indicated that using the session shuffle split as the data folding method, along with the multichannel 2D convolutional neural network (M2DCNN) classifier, recorded the best authentic classification accuracy, which outperformed the efficiency of 3D convolutional neural network (3DCNN). In this manuscript, we discuss the tolerability of within-subject or within-session information leakage, of which the impact is generally considered small but complex and essentially unknown; this requires clarification in future studies. |
format | Online Article Text |
id | pubmed-7928289 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79282892021-03-04 Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset Yotsutsuji, Sunao Lei, Miaomei Akama, Hiroyuki Front Neuroinform Neuroscience Recently, several deep learning methods have been applied to decoding in task-related fMRI, and their advantages have been exploited in a variety of ways. However, this paradigm is sometimes problematic, due to the difficulty of applying deep learning to high-dimensional data and small sample size conditions. The difficulties in gathering a large amount of data to develop predictive machine learning models with multiple layers from fMRI experiments with complicated designs and tasks are well-recognized. Group-level, multi-voxel pattern analysis with small sample sizes results in low statistical power and large accuracy evaluation errors; failure in such instances is ascribed to the individual variability that risks information leakage, a particular issue when dealing with a limited number of subjects. In this study, using a small-size fMRI dataset evaluating bilingual language switch in a property generation task, we evaluated the relative fit of different deep learning models, incorporating moderate split methods to control the amount of information leakage. Our results indicated that using the session shuffle split as the data folding method, along with the multichannel 2D convolutional neural network (M2DCNN) classifier, recorded the best authentic classification accuracy, which outperformed the efficiency of 3D convolutional neural network (3DCNN). In this manuscript, we discuss the tolerability of within-subject or within-session information leakage, of which the impact is generally considered small but complex and essentially unknown; this requires clarification in future studies. Frontiers Media S.A. 2021-02-12 /pmc/articles/PMC7928289/ /pubmed/33679360 http://dx.doi.org/10.3389/fninf.2021.577451 Text en Copyright © 2021 Yotsutsuji, Lei and Akama. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Yotsutsuji, Sunao Lei, Miaomei Akama, Hiroyuki Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title | Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title_full | Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title_fullStr | Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title_full_unstemmed | Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title_short | Evaluation of Task fMRI Decoding With Deep Learning on a Small Sample Dataset |
title_sort | evaluation of task fmri decoding with deep learning on a small sample dataset |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928289/ https://www.ncbi.nlm.nih.gov/pubmed/33679360 http://dx.doi.org/10.3389/fninf.2021.577451 |
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