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Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region
Various approaches of differing mathematical complexities are being applied for spatial prediction of soil properties. Regression kriging is a widely used hybrid approach of spatial variation that combines correlation between soil properties and environmental factors with spatial autocorrelation bet...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7931963/ https://www.ncbi.nlm.nih.gov/pubmed/33693410 http://dx.doi.org/10.3389/fdata.2020.528441 |
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author | Mishra, Umakant Gautam, Sagar Riley, William J. Hoffman, Forrest M. |
author_facet | Mishra, Umakant Gautam, Sagar Riley, William J. Hoffman, Forrest M. |
author_sort | Mishra, Umakant |
collection | PubMed |
description | Various approaches of differing mathematical complexities are being applied for spatial prediction of soil properties. Regression kriging is a widely used hybrid approach of spatial variation that combines correlation between soil properties and environmental factors with spatial autocorrelation between soil observations. In this study, we compared four machine learning approaches (gradient boosting machine, multinarrative adaptive regression spline, random forest, and support vector machine) with regression kriging to predict the spatial variation of surface (0–30 cm) soil organic carbon (SOC) stocks at 250-m spatial resolution across the northern circumpolar permafrost region. We combined 2,374 soil profile observations (calibration datasets) with georeferenced datasets of environmental factors (climate, topography, land cover, bedrock geology, and soil types) to predict the spatial variation of surface SOC stocks. We evaluated the prediction accuracy at randomly selected sites (validation datasets) across the study area. We found that different techniques inferred different numbers of environmental factors and their relative importance for prediction of SOC stocks. Regression kriging produced lower prediction errors in comparison to multinarrative adaptive regression spline and support vector machine, and comparable prediction accuracy to gradient boosting machine and random forest. However, the ensemble median prediction of SOC stocks obtained from all four machine learning techniques showed highest prediction accuracy. Although the use of different approaches in spatial prediction of soil properties will depend on the availability of soil and environmental datasets and computational resources, we conclude that the ensemble median prediction obtained from multiple machine learning approaches provides greater spatial details and produces the highest prediction accuracy. Thus an ensemble prediction approach can be a better choice than any single prediction technique for predicting the spatial variation of SOC stocks. |
format | Online Article Text |
id | pubmed-7931963 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79319632021-03-09 Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region Mishra, Umakant Gautam, Sagar Riley, William J. Hoffman, Forrest M. Front Big Data Big Data Various approaches of differing mathematical complexities are being applied for spatial prediction of soil properties. Regression kriging is a widely used hybrid approach of spatial variation that combines correlation between soil properties and environmental factors with spatial autocorrelation between soil observations. In this study, we compared four machine learning approaches (gradient boosting machine, multinarrative adaptive regression spline, random forest, and support vector machine) with regression kriging to predict the spatial variation of surface (0–30 cm) soil organic carbon (SOC) stocks at 250-m spatial resolution across the northern circumpolar permafrost region. We combined 2,374 soil profile observations (calibration datasets) with georeferenced datasets of environmental factors (climate, topography, land cover, bedrock geology, and soil types) to predict the spatial variation of surface SOC stocks. We evaluated the prediction accuracy at randomly selected sites (validation datasets) across the study area. We found that different techniques inferred different numbers of environmental factors and their relative importance for prediction of SOC stocks. Regression kriging produced lower prediction errors in comparison to multinarrative adaptive regression spline and support vector machine, and comparable prediction accuracy to gradient boosting machine and random forest. However, the ensemble median prediction of SOC stocks obtained from all four machine learning techniques showed highest prediction accuracy. Although the use of different approaches in spatial prediction of soil properties will depend on the availability of soil and environmental datasets and computational resources, we conclude that the ensemble median prediction obtained from multiple machine learning approaches provides greater spatial details and produces the highest prediction accuracy. Thus an ensemble prediction approach can be a better choice than any single prediction technique for predicting the spatial variation of SOC stocks. Frontiers Media S.A. 2020-10-28 /pmc/articles/PMC7931963/ /pubmed/33693410 http://dx.doi.org/10.3389/fdata.2020.528441 Text en Copyright © 2020 Mishra, Gautam, Riley and Hoffman http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Big Data Mishra, Umakant Gautam, Sagar Riley, William J. Hoffman, Forrest M. Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title | Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title_full | Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title_fullStr | Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title_full_unstemmed | Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title_short | Ensemble Machine Learning Approach Improves Predicted Spatial Variation of Surface Soil Organic Carbon Stocks in Data-Limited Northern Circumpolar Region |
title_sort | ensemble machine learning approach improves predicted spatial variation of surface soil organic carbon stocks in data-limited northern circumpolar region |
topic | Big Data |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7931963/ https://www.ncbi.nlm.nih.gov/pubmed/33693410 http://dx.doi.org/10.3389/fdata.2020.528441 |
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