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Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy

Multiple-trait model tends to be the best alternative for the analysis of repeated measures, since they consider the genetic and residual correlations between measures and improve the selective accuracy. Thus, the objective of this study was to propose a multiple-trait Bayesian model for repeated me...

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Autores principales: Peixoto, Marco Antônio, Evangelista, Jeniffer Santana Pinto Coelho, Coelho, Igor Ferreira, Alves, Rodrigo Silva, Laviola, Bruno Gâlveas, Fonseca e Silva, Fabyano, de Resende, Marcos Deon Vilela, Bhering, Leonardo Lopes
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7932130/
https://www.ncbi.nlm.nih.gov/pubmed/33661980
http://dx.doi.org/10.1371/journal.pone.0247775
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author Peixoto, Marco Antônio
Evangelista, Jeniffer Santana Pinto Coelho
Coelho, Igor Ferreira
Alves, Rodrigo Silva
Laviola, Bruno Gâlveas
Fonseca e Silva, Fabyano
de Resende, Marcos Deon Vilela
Bhering, Leonardo Lopes
author_facet Peixoto, Marco Antônio
Evangelista, Jeniffer Santana Pinto Coelho
Coelho, Igor Ferreira
Alves, Rodrigo Silva
Laviola, Bruno Gâlveas
Fonseca e Silva, Fabyano
de Resende, Marcos Deon Vilela
Bhering, Leonardo Lopes
author_sort Peixoto, Marco Antônio
collection PubMed
description Multiple-trait model tends to be the best alternative for the analysis of repeated measures, since they consider the genetic and residual correlations between measures and improve the selective accuracy. Thus, the objective of this study was to propose a multiple-trait Bayesian model for repeated measures analysis in Jatropha curcas breeding for bioenergy. To this end, the grain yield trait of 730 individuals of 73 half-sib families was evaluated over six harvests. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. Genetic correlation between pairs of measures were estimated and four selective intensities (27.4%, 20.5%, 13.7%, and 6.9%) were used to compute the selection gains. The full model was selected based on deviance information criterion. Genetic correlations of low (ρ(g) ≤ 0.33), moderate (0.34 ≤ ρ(g) ≤ 0.66), and high magnitude (ρ(g) ≥ 0.67) were observed between pairs of harvests. Bayesian analyses provide robust inference of genetic parameters and genetic values, with high selective accuracies. In summary, the multiple-trait Bayesian model allowed the reliable selection of superior Jatropha curcas progenies. Therefore, we recommend this model to genetic evaluation of Jatropha curcas genotypes, and its generalization, in other perennials.
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spelling pubmed-79321302021-03-10 Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy Peixoto, Marco Antônio Evangelista, Jeniffer Santana Pinto Coelho Coelho, Igor Ferreira Alves, Rodrigo Silva Laviola, Bruno Gâlveas Fonseca e Silva, Fabyano de Resende, Marcos Deon Vilela Bhering, Leonardo Lopes PLoS One Research Article Multiple-trait model tends to be the best alternative for the analysis of repeated measures, since they consider the genetic and residual correlations between measures and improve the selective accuracy. Thus, the objective of this study was to propose a multiple-trait Bayesian model for repeated measures analysis in Jatropha curcas breeding for bioenergy. To this end, the grain yield trait of 730 individuals of 73 half-sib families was evaluated over six harvests. The Markov Chain Monte Carlo algorithm was used to estimate genetic parameters and genetic values. Genetic correlation between pairs of measures were estimated and four selective intensities (27.4%, 20.5%, 13.7%, and 6.9%) were used to compute the selection gains. The full model was selected based on deviance information criterion. Genetic correlations of low (ρ(g) ≤ 0.33), moderate (0.34 ≤ ρ(g) ≤ 0.66), and high magnitude (ρ(g) ≥ 0.67) were observed between pairs of harvests. Bayesian analyses provide robust inference of genetic parameters and genetic values, with high selective accuracies. In summary, the multiple-trait Bayesian model allowed the reliable selection of superior Jatropha curcas progenies. Therefore, we recommend this model to genetic evaluation of Jatropha curcas genotypes, and its generalization, in other perennials. Public Library of Science 2021-03-04 /pmc/articles/PMC7932130/ /pubmed/33661980 http://dx.doi.org/10.1371/journal.pone.0247775 Text en © 2021 Peixoto et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Peixoto, Marco Antônio
Evangelista, Jeniffer Santana Pinto Coelho
Coelho, Igor Ferreira
Alves, Rodrigo Silva
Laviola, Bruno Gâlveas
Fonseca e Silva, Fabyano
de Resende, Marcos Deon Vilela
Bhering, Leonardo Lopes
Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title_full Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title_fullStr Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title_full_unstemmed Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title_short Multiple-trait model through Bayesian inference applied to Jatropha curcas breeding for bioenergy
title_sort multiple-trait model through bayesian inference applied to jatropha curcas breeding for bioenergy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7932130/
https://www.ncbi.nlm.nih.gov/pubmed/33661980
http://dx.doi.org/10.1371/journal.pone.0247775
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