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Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas

For lung adenocarcinoma (LUAD), patients of different stages have strong heterogeneity, and their overall prognosis varies greatly. Thus, exploration of novel biomarkers to better clarify the characteristics of LUAD is urgent. Multi-omics information of LUAD patients were collected form TCGA. Three...

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Autores principales: Sun, Sijin, Fei, Kailun, Zhang, Guochao, Wang, Juhong, Yang, Yannan, Guo, Wei, Yang, Zhenlin, Wang, Jie, Xue, Qi, Gao, Yibo, He, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933593/
https://www.ncbi.nlm.nih.gov/pubmed/33679869
http://dx.doi.org/10.3389/fgene.2020.617174
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author Sun, Sijin
Fei, Kailun
Zhang, Guochao
Wang, Juhong
Yang, Yannan
Guo, Wei
Yang, Zhenlin
Wang, Jie
Xue, Qi
Gao, Yibo
He, Jie
author_facet Sun, Sijin
Fei, Kailun
Zhang, Guochao
Wang, Juhong
Yang, Yannan
Guo, Wei
Yang, Zhenlin
Wang, Jie
Xue, Qi
Gao, Yibo
He, Jie
author_sort Sun, Sijin
collection PubMed
description For lung adenocarcinoma (LUAD), patients of different stages have strong heterogeneity, and their overall prognosis varies greatly. Thus, exploration of novel biomarkers to better clarify the characteristics of LUAD is urgent. Multi-omics information of LUAD patients were collected form TCGA. Three independent LUAD cohorts were obtained from gene expression omnibus (GEO). A multi-omics correlation analysis of METTL5 was performed in TCGA dataset. To build a METTL5-associated prognostic score (MAPS). Spathial and random forest methods were first applied for feature selection. Then, LASSO was implemented to develop the model in TCGA cohort. The prognostic value of MAPS was validated in three independent GEO datasets. Finally, functional annotation was conducted using gene set enrichment analysis (GSEA) and the abundances of infiltrated immune cells were estimated by ImmuCellAI algorithm. A total of 901 LUAD patients were included. The expression of METTL5 in LUAD was significantly higher than that in normal lung tissue. And high expression of METTL5 indicated poor prognosis in all different stages (P < 0.001, HR = 1.81). Five genes (RAC1, C11of24, METTL5, RCCD1, and SLC7A5) were used to construct MAPS and MAPS was significantly correlated with poor prognosis (P < 0.001, HR = 2.15). Furthermore, multivariate Cox regression analysis suggested MAPS as an independent prognostic factor. Functional enrichment revealed significant association between MAPS and several immune components and pathways. This study provides insights into the potential significance of METTL5 in LUAD and MAPS can serve as a promising biomarker for LUAD.
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spelling pubmed-79335932021-03-06 Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas Sun, Sijin Fei, Kailun Zhang, Guochao Wang, Juhong Yang, Yannan Guo, Wei Yang, Zhenlin Wang, Jie Xue, Qi Gao, Yibo He, Jie Front Genet Genetics For lung adenocarcinoma (LUAD), patients of different stages have strong heterogeneity, and their overall prognosis varies greatly. Thus, exploration of novel biomarkers to better clarify the characteristics of LUAD is urgent. Multi-omics information of LUAD patients were collected form TCGA. Three independent LUAD cohorts were obtained from gene expression omnibus (GEO). A multi-omics correlation analysis of METTL5 was performed in TCGA dataset. To build a METTL5-associated prognostic score (MAPS). Spathial and random forest methods were first applied for feature selection. Then, LASSO was implemented to develop the model in TCGA cohort. The prognostic value of MAPS was validated in three independent GEO datasets. Finally, functional annotation was conducted using gene set enrichment analysis (GSEA) and the abundances of infiltrated immune cells were estimated by ImmuCellAI algorithm. A total of 901 LUAD patients were included. The expression of METTL5 in LUAD was significantly higher than that in normal lung tissue. And high expression of METTL5 indicated poor prognosis in all different stages (P < 0.001, HR = 1.81). Five genes (RAC1, C11of24, METTL5, RCCD1, and SLC7A5) were used to construct MAPS and MAPS was significantly correlated with poor prognosis (P < 0.001, HR = 2.15). Furthermore, multivariate Cox regression analysis suggested MAPS as an independent prognostic factor. Functional enrichment revealed significant association between MAPS and several immune components and pathways. This study provides insights into the potential significance of METTL5 in LUAD and MAPS can serve as a promising biomarker for LUAD. Frontiers Media S.A. 2021-02-19 /pmc/articles/PMC7933593/ /pubmed/33679869 http://dx.doi.org/10.3389/fgene.2020.617174 Text en Copyright © 2021 Sun, Fei, Zhang, Wang, Yang, Guo, Yang, Wang, Xue, Gao and He. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Sun, Sijin
Fei, Kailun
Zhang, Guochao
Wang, Juhong
Yang, Yannan
Guo, Wei
Yang, Zhenlin
Wang, Jie
Xue, Qi
Gao, Yibo
He, Jie
Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title_full Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title_fullStr Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title_full_unstemmed Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title_short Construction and Comprehensive Analyses of a METTL5-Associated Prognostic Signature With Immune Implication in Lung Adenocarcinomas
title_sort construction and comprehensive analyses of a mettl5-associated prognostic signature with immune implication in lung adenocarcinomas
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933593/
https://www.ncbi.nlm.nih.gov/pubmed/33679869
http://dx.doi.org/10.3389/fgene.2020.617174
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