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Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their r...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933965/ https://www.ncbi.nlm.nih.gov/pubmed/33484110 http://dx.doi.org/10.1111/jcmm.16251 |
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author | Lin, Zhenhao Zhao, Yongchao Dai, Fangjie Su, Enyong Li, Fuhai Yan, Yan |
author_facet | Lin, Zhenhao Zhao, Yongchao Dai, Fangjie Su, Enyong Li, Fuhai Yan, Yan |
author_sort | Lin, Zhenhao |
collection | PubMed |
description | Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their role in human DCM has not been fully elucidated. In the present study, heart samples from DCM patients and healthy controls were used to identify circRNAs by RNA sequencing. Real‐time quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) was conducted to validate differentially expressed circRNAs and mRNAs. A total of 9585 circRNAs and 22050 mRNAs were detected in the two groups. Overall, 213 circRNAs and 617 mRNAs were significantly up‐regulated in the DCM group compared with the control group. Similarly, 85 circRNAs and 1125 mRNAs were significantly down‐regulated. According to the ceRNA theory, circRNAs can indirectly interact with mRNAs by directly binding to microRNAs (miRNAs), and circRNAs and mRNAs should be concurrently either up‐regulated or down‐regulated. Based on this theory, we constructed two circRNA‐miRNA‐mRNA networks by using the RNA sequencing data and prediction by proprietary software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to probe the potential functions of differentially expressed circRNAs. In conclusion, this study revealed that the expression of cardiac circRNAs was altered in human DCM and explored the potential functions of circRNAs by constructing ceRNA networks. These findings provide a foundation for future studies of circRNAs in DCM. |
format | Online Article Text |
id | pubmed-7933965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-79339652021-03-15 Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy Lin, Zhenhao Zhao, Yongchao Dai, Fangjie Su, Enyong Li, Fuhai Yan, Yan J Cell Mol Med Original Articles Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their role in human DCM has not been fully elucidated. In the present study, heart samples from DCM patients and healthy controls were used to identify circRNAs by RNA sequencing. Real‐time quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) was conducted to validate differentially expressed circRNAs and mRNAs. A total of 9585 circRNAs and 22050 mRNAs were detected in the two groups. Overall, 213 circRNAs and 617 mRNAs were significantly up‐regulated in the DCM group compared with the control group. Similarly, 85 circRNAs and 1125 mRNAs were significantly down‐regulated. According to the ceRNA theory, circRNAs can indirectly interact with mRNAs by directly binding to microRNAs (miRNAs), and circRNAs and mRNAs should be concurrently either up‐regulated or down‐regulated. Based on this theory, we constructed two circRNA‐miRNA‐mRNA networks by using the RNA sequencing data and prediction by proprietary software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to probe the potential functions of differentially expressed circRNAs. In conclusion, this study revealed that the expression of cardiac circRNAs was altered in human DCM and explored the potential functions of circRNAs by constructing ceRNA networks. These findings provide a foundation for future studies of circRNAs in DCM. John Wiley and Sons Inc. 2021-01-22 2021-03 /pmc/articles/PMC7933965/ /pubmed/33484110 http://dx.doi.org/10.1111/jcmm.16251 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Lin, Zhenhao Zhao, Yongchao Dai, Fangjie Su, Enyong Li, Fuhai Yan, Yan Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title | Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title_full | Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title_fullStr | Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title_full_unstemmed | Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title_short | Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy |
title_sort | analysis of changes in circular rna expression and construction of cerna networks in human dilated cardiomyopathy |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933965/ https://www.ncbi.nlm.nih.gov/pubmed/33484110 http://dx.doi.org/10.1111/jcmm.16251 |
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