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Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy

Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their r...

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Autores principales: Lin, Zhenhao, Zhao, Yongchao, Dai, Fangjie, Su, Enyong, Li, Fuhai, Yan, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933965/
https://www.ncbi.nlm.nih.gov/pubmed/33484110
http://dx.doi.org/10.1111/jcmm.16251
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author Lin, Zhenhao
Zhao, Yongchao
Dai, Fangjie
Su, Enyong
Li, Fuhai
Yan, Yan
author_facet Lin, Zhenhao
Zhao, Yongchao
Dai, Fangjie
Su, Enyong
Li, Fuhai
Yan, Yan
author_sort Lin, Zhenhao
collection PubMed
description Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their role in human DCM has not been fully elucidated. In the present study, heart samples from DCM patients and healthy controls were used to identify circRNAs by RNA sequencing. Real‐time quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) was conducted to validate differentially expressed circRNAs and mRNAs. A total of 9585 circRNAs and 22050 mRNAs were detected in the two groups. Overall, 213 circRNAs and 617 mRNAs were significantly up‐regulated in the DCM group compared with the control group. Similarly, 85 circRNAs and 1125 mRNAs were significantly down‐regulated. According to the ceRNA theory, circRNAs can indirectly interact with mRNAs by directly binding to microRNAs (miRNAs), and circRNAs and mRNAs should be concurrently either up‐regulated or down‐regulated. Based on this theory, we constructed two circRNA‐miRNA‐mRNA networks by using the RNA sequencing data and prediction by proprietary software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to probe the potential functions of differentially expressed circRNAs. In conclusion, this study revealed that the expression of cardiac circRNAs was altered in human DCM and explored the potential functions of circRNAs by constructing ceRNA networks. These findings provide a foundation for future studies of circRNAs in DCM.
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spelling pubmed-79339652021-03-15 Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy Lin, Zhenhao Zhao, Yongchao Dai, Fangjie Su, Enyong Li, Fuhai Yan, Yan J Cell Mol Med Original Articles Dilated cardiomyopathy (DCM) is a severe life‐threatening disease worldwide, and the underlying mechanisms remain unclear. Circular RNAs (circRNAs) have been reported to play important roles in various cardiovascular diseases and can function as competitive endogenous RNAs (ceRNAs). However, their role in human DCM has not been fully elucidated. In the present study, heart samples from DCM patients and healthy controls were used to identify circRNAs by RNA sequencing. Real‐time quantitative reverse transcription‐polymerase chain reaction (qRT‐PCR) was conducted to validate differentially expressed circRNAs and mRNAs. A total of 9585 circRNAs and 22050 mRNAs were detected in the two groups. Overall, 213 circRNAs and 617 mRNAs were significantly up‐regulated in the DCM group compared with the control group. Similarly, 85 circRNAs and 1125 mRNAs were significantly down‐regulated. According to the ceRNA theory, circRNAs can indirectly interact with mRNAs by directly binding to microRNAs (miRNAs), and circRNAs and mRNAs should be concurrently either up‐regulated or down‐regulated. Based on this theory, we constructed two circRNA‐miRNA‐mRNA networks by using the RNA sequencing data and prediction by proprietary software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed to probe the potential functions of differentially expressed circRNAs. In conclusion, this study revealed that the expression of cardiac circRNAs was altered in human DCM and explored the potential functions of circRNAs by constructing ceRNA networks. These findings provide a foundation for future studies of circRNAs in DCM. John Wiley and Sons Inc. 2021-01-22 2021-03 /pmc/articles/PMC7933965/ /pubmed/33484110 http://dx.doi.org/10.1111/jcmm.16251 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Lin, Zhenhao
Zhao, Yongchao
Dai, Fangjie
Su, Enyong
Li, Fuhai
Yan, Yan
Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title_full Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title_fullStr Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title_full_unstemmed Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title_short Analysis of changes in circular RNA expression and construction of ceRNA networks in human dilated cardiomyopathy
title_sort analysis of changes in circular rna expression and construction of cerna networks in human dilated cardiomyopathy
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7933965/
https://www.ncbi.nlm.nih.gov/pubmed/33484110
http://dx.doi.org/10.1111/jcmm.16251
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