Cargando…

Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing

PURPOSE: Nontuberculous mycobacteria (NTM) is ubiquitous in the environment, but NTM lung disease (NTM-LD) is uncommon. Since exposure to NTM is inevitable, patients who develop NTM-LD are likely to have specific susceptibility factors, such as primary ciliary dyskinesia (PCD). PCD is a genetically...

Descripción completa

Detalles Bibliográficos
Autores principales: Cho, Eun Hye, Ki, Chang-Seok, Yun, Sun Ae, Kim, Su-Young, Jhun, Byung Woo, Koh, Won-Jung, Huh, Hee Jae, Lee, Nam Yong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Yonsei University College of Medicine 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7934102/
https://www.ncbi.nlm.nih.gov/pubmed/33635012
http://dx.doi.org/10.3349/ymj.2021.62.3.224
_version_ 1783660756663795712
author Cho, Eun Hye
Ki, Chang-Seok
Yun, Sun Ae
Kim, Su-Young
Jhun, Byung Woo
Koh, Won-Jung
Huh, Hee Jae
Lee, Nam Yong
author_facet Cho, Eun Hye
Ki, Chang-Seok
Yun, Sun Ae
Kim, Su-Young
Jhun, Byung Woo
Koh, Won-Jung
Huh, Hee Jae
Lee, Nam Yong
author_sort Cho, Eun Hye
collection PubMed
description PURPOSE: Nontuberculous mycobacteria (NTM) is ubiquitous in the environment, but NTM lung disease (NTM-LD) is uncommon. Since exposure to NTM is inevitable, patients who develop NTM-LD are likely to have specific susceptibility factors, such as primary ciliary dyskinesia (PCD). PCD is a genetically heterogeneous disorder of motile cilia and is characterized by chronic respiratory tract infection, organ laterality defect, and infertility. In this study, we performed whole exome sequencing (WES) and investigated the genetic characteristics of adult NTM patients with suspected PCD. MATERIALS AND METHODS: WES was performed in 13 NTM-LD patients who were suspected of having PCD by clinical symptoms and/or ultrastructural ciliary defect observed by transmission electron microscopy. A total of 45 PCD-causing genes, 23 PCD-candidate genes, and 990 ciliome genes were analyzed. RESULTS: Four patients were found to have biallelic loss-of-function (LoF) variants in the following PCD-causing genes: CCDC114, DNAH5, HYDIN, and NME5. In four other patients, only one LoF variant was identified, while the remaining five patients did not have any LoF variants. CONCLUSION: At least 30.8% of NTM-LD patients who were suspected of having PCD had biallelic LoF variants, and an additional 30.8% of patients had one LoF variant. Therefore, PCD should be considered in patients with NTM-LD with symptoms or signs suspicious of PCD.
format Online
Article
Text
id pubmed-7934102
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Yonsei University College of Medicine
record_format MEDLINE/PubMed
spelling pubmed-79341022021-03-11 Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing Cho, Eun Hye Ki, Chang-Seok Yun, Sun Ae Kim, Su-Young Jhun, Byung Woo Koh, Won-Jung Huh, Hee Jae Lee, Nam Yong Yonsei Med J Original Article PURPOSE: Nontuberculous mycobacteria (NTM) is ubiquitous in the environment, but NTM lung disease (NTM-LD) is uncommon. Since exposure to NTM is inevitable, patients who develop NTM-LD are likely to have specific susceptibility factors, such as primary ciliary dyskinesia (PCD). PCD is a genetically heterogeneous disorder of motile cilia and is characterized by chronic respiratory tract infection, organ laterality defect, and infertility. In this study, we performed whole exome sequencing (WES) and investigated the genetic characteristics of adult NTM patients with suspected PCD. MATERIALS AND METHODS: WES was performed in 13 NTM-LD patients who were suspected of having PCD by clinical symptoms and/or ultrastructural ciliary defect observed by transmission electron microscopy. A total of 45 PCD-causing genes, 23 PCD-candidate genes, and 990 ciliome genes were analyzed. RESULTS: Four patients were found to have biallelic loss-of-function (LoF) variants in the following PCD-causing genes: CCDC114, DNAH5, HYDIN, and NME5. In four other patients, only one LoF variant was identified, while the remaining five patients did not have any LoF variants. CONCLUSION: At least 30.8% of NTM-LD patients who were suspected of having PCD had biallelic LoF variants, and an additional 30.8% of patients had one LoF variant. Therefore, PCD should be considered in patients with NTM-LD with symptoms or signs suspicious of PCD. Yonsei University College of Medicine 2021-03-01 2021-02-15 /pmc/articles/PMC7934102/ /pubmed/33635012 http://dx.doi.org/10.3349/ymj.2021.62.3.224 Text en © Copyright: Yonsei University College of Medicine 2021 https://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Cho, Eun Hye
Ki, Chang-Seok
Yun, Sun Ae
Kim, Su-Young
Jhun, Byung Woo
Koh, Won-Jung
Huh, Hee Jae
Lee, Nam Yong
Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title_full Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title_fullStr Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title_full_unstemmed Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title_short Genetic Analysis of Korean Adult Patients with Nontuberculous Mycobacteria Suspected of Primary Ciliary Dyskinesia Using Whole Exome Sequencing
title_sort genetic analysis of korean adult patients with nontuberculous mycobacteria suspected of primary ciliary dyskinesia using whole exome sequencing
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7934102/
https://www.ncbi.nlm.nih.gov/pubmed/33635012
http://dx.doi.org/10.3349/ymj.2021.62.3.224
work_keys_str_mv AT choeunhye geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT kichangseok geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT yunsunae geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT kimsuyoung geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT jhunbyungwoo geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT kohwonjung geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT huhheejae geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing
AT leenamyong geneticanalysisofkoreanadultpatientswithnontuberculousmycobacteriasuspectedofprimaryciliarydyskinesiausingwholeexomesequencing