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Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions
We propose a novel framework for determining radiomics feature robustness by considering the effects of both biological and noise signals. This framework is preliminarily tested in a study predicting the epidermal growth factor receptor (EGFR) mutation status in non-small cell lung cancer (NSCLC) pa...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7934702/ https://www.ncbi.nlm.nih.gov/pubmed/33681463 http://dx.doi.org/10.3390/tomography7010005 |
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author | Lu, Lin Sun, Shawn H. Afran, Aaron Yang, Hao Lu, Zheng Feng So, James Schwartz, Lawrence H. Zhao, Binsheng |
author_facet | Lu, Lin Sun, Shawn H. Afran, Aaron Yang, Hao Lu, Zheng Feng So, James Schwartz, Lawrence H. Zhao, Binsheng |
author_sort | Lu, Lin |
collection | PubMed |
description | We propose a novel framework for determining radiomics feature robustness by considering the effects of both biological and noise signals. This framework is preliminarily tested in a study predicting the epidermal growth factor receptor (EGFR) mutation status in non-small cell lung cancer (NSCLC) patients. Pairs of CT images (baseline, 3-week post therapy) of 46 NSCLC patients with known EGFR mutation status were collected and a FDA-customized anthropomorphic thoracic phantom was scanned on two vendors’ scanners at four different tube currents. Delta radiomics features were extracted from the NSCLC patient CTs and reproducible, non-redundant, and informative features were identified. The feature value differences between EGFR mutant and EGFR wildtype patients were quantitatively measured as the biological signal. Similarly, radiomics features were extracted from the phantom CTs. A pairwise comparison between settings resulted in a feature value difference that was quantitatively measured as the noise signal. Biological signals were compared to noise signals at each setting to determine if the distributions were significantly different by two-sample t-test, and thus robust. Four optimal features were selected to predict EGFR mutation status, Tumor-Mass, Sigmoid-Offset-Mean, Gabor-Energy and DWT-Energy, which quantified tumor mass, tumor-parenchyma density transition at boundary, line-like pattern inside tumor and intratumoral heterogeneity, respectively. The first three variables showed robustness across the majority of studied CT acquisition parameters. The textual feature DWT-Energy was less robust. The proposed framework was able to determine robustness of radiomics features at specific settings by comparing biological signal to noise signal. Identification of robust radiomics features may improve the generalizability of radiomics models in future studies. |
format | Online Article Text |
id | pubmed-7934702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-79347022021-03-06 Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions Lu, Lin Sun, Shawn H. Afran, Aaron Yang, Hao Lu, Zheng Feng So, James Schwartz, Lawrence H. Zhao, Binsheng Tomography Article We propose a novel framework for determining radiomics feature robustness by considering the effects of both biological and noise signals. This framework is preliminarily tested in a study predicting the epidermal growth factor receptor (EGFR) mutation status in non-small cell lung cancer (NSCLC) patients. Pairs of CT images (baseline, 3-week post therapy) of 46 NSCLC patients with known EGFR mutation status were collected and a FDA-customized anthropomorphic thoracic phantom was scanned on two vendors’ scanners at four different tube currents. Delta radiomics features were extracted from the NSCLC patient CTs and reproducible, non-redundant, and informative features were identified. The feature value differences between EGFR mutant and EGFR wildtype patients were quantitatively measured as the biological signal. Similarly, radiomics features were extracted from the phantom CTs. A pairwise comparison between settings resulted in a feature value difference that was quantitatively measured as the noise signal. Biological signals were compared to noise signals at each setting to determine if the distributions were significantly different by two-sample t-test, and thus robust. Four optimal features were selected to predict EGFR mutation status, Tumor-Mass, Sigmoid-Offset-Mean, Gabor-Energy and DWT-Energy, which quantified tumor mass, tumor-parenchyma density transition at boundary, line-like pattern inside tumor and intratumoral heterogeneity, respectively. The first three variables showed robustness across the majority of studied CT acquisition parameters. The textual feature DWT-Energy was less robust. The proposed framework was able to determine robustness of radiomics features at specific settings by comparing biological signal to noise signal. Identification of robust radiomics features may improve the generalizability of radiomics models in future studies. MDPI 2021-02-09 /pmc/articles/PMC7934702/ /pubmed/33681463 http://dx.doi.org/10.3390/tomography7010005 Text en © 2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lu, Lin Sun, Shawn H. Afran, Aaron Yang, Hao Lu, Zheng Feng So, James Schwartz, Lawrence H. Zhao, Binsheng Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title | Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title_full | Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title_fullStr | Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title_full_unstemmed | Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title_short | Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions |
title_sort | identifying robust radiomics features for lung cancer by using in-vivo and phantom lung lesions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7934702/ https://www.ncbi.nlm.nih.gov/pubmed/33681463 http://dx.doi.org/10.3390/tomography7010005 |
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