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Combining network topology and information theory to construct representative brain networks
Network neuroscience employs graph theory to investigate the human brain as a complex network, and derive generalizable insights about the brain’s network properties. However, graph-theoretical results obtained from network construction pipelines that produce idiosyncratic networks may not generaliz...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7935031/ https://www.ncbi.nlm.nih.gov/pubmed/33688608 http://dx.doi.org/10.1162/netn_a_00170 |
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author | Luppi, Andrea I. Stamatakis, Emmanuel A. |
author_facet | Luppi, Andrea I. Stamatakis, Emmanuel A. |
author_sort | Luppi, Andrea I. |
collection | PubMed |
description | Network neuroscience employs graph theory to investigate the human brain as a complex network, and derive generalizable insights about the brain’s network properties. However, graph-theoretical results obtained from network construction pipelines that produce idiosyncratic networks may not generalize when alternative pipelines are employed. This issue is especially pressing because a wide variety of network construction pipelines have been employed in the human network neuroscience literature, making comparisons between studies problematic. Here, we investigate how to produce networks that are maximally representative of the broader set of brain networks obtained from the same neuroimaging data. We do so by minimizing an information-theoretic measure of divergence between network topologies, known as the portrait divergence. Based on functional and diffusion MRI data from the Human Connectome Project, we consider anatomical, functional, and multimodal parcellations at three different scales, and 48 distinct ways of defining network edges. We show that the highest representativeness can be obtained by using parcellations in the order of 200 regions and filtering functional networks based on efficiency-cost optimization—though suitable alternatives are also highlighted. Overall, we identify specific node definition and thresholding procedures that neuroscientists can follow in order to derive representative networks from their human neuroimaging data. |
format | Online Article Text |
id | pubmed-7935031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-79350312021-03-08 Combining network topology and information theory to construct representative brain networks Luppi, Andrea I. Stamatakis, Emmanuel A. Netw Neurosci Methods Network neuroscience employs graph theory to investigate the human brain as a complex network, and derive generalizable insights about the brain’s network properties. However, graph-theoretical results obtained from network construction pipelines that produce idiosyncratic networks may not generalize when alternative pipelines are employed. This issue is especially pressing because a wide variety of network construction pipelines have been employed in the human network neuroscience literature, making comparisons between studies problematic. Here, we investigate how to produce networks that are maximally representative of the broader set of brain networks obtained from the same neuroimaging data. We do so by minimizing an information-theoretic measure of divergence between network topologies, known as the portrait divergence. Based on functional and diffusion MRI data from the Human Connectome Project, we consider anatomical, functional, and multimodal parcellations at three different scales, and 48 distinct ways of defining network edges. We show that the highest representativeness can be obtained by using parcellations in the order of 200 regions and filtering functional networks based on efficiency-cost optimization—though suitable alternatives are also highlighted. Overall, we identify specific node definition and thresholding procedures that neuroscientists can follow in order to derive representative networks from their human neuroimaging data. MIT Press 2021-02-01 /pmc/articles/PMC7935031/ /pubmed/33688608 http://dx.doi.org/10.1162/netn_a_00170 Text en © 2020 Massachusetts Institute of Technology This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/legalcode. |
spellingShingle | Methods Luppi, Andrea I. Stamatakis, Emmanuel A. Combining network topology and information theory to construct representative brain networks |
title | Combining network topology and information theory to construct representative brain networks |
title_full | Combining network topology and information theory to construct representative brain networks |
title_fullStr | Combining network topology and information theory to construct representative brain networks |
title_full_unstemmed | Combining network topology and information theory to construct representative brain networks |
title_short | Combining network topology and information theory to construct representative brain networks |
title_sort | combining network topology and information theory to construct representative brain networks |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7935031/ https://www.ncbi.nlm.nih.gov/pubmed/33688608 http://dx.doi.org/10.1162/netn_a_00170 |
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