Cargando…

Research and Exploratory Analysis Driven—Time-data Visualization (read-tv) software

MOTIVATION: Research & Exploratory Analysis Driven Time-data Visualization (read-tv) is an open source R Shiny application for visualizing irregularly and regularly spaced longitudinal data. read-tv provides unique filtering and changepoint analysis (CPA) features. The need for these analyses wa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Del Gaizo, John, Catchpole, Ken R, Alekseyenko, Alexander V
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Application Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7935610/ https://www.ncbi.nlm.nih.gov/pubmed/33709063 http://dx.doi.org/10.1093/jamiaopen/ooab007

Ejemplares similares

4474 READ-TV: Research and Exploratory Analysis Driven Time-data Visualization
por: Gaizo, John Del, et al.
Publicado: (2020)

Red Flag/Blue Flag visualization of a common CNN for text classification
por: Del Gaizo, John, et al.
Publicado: (2023)

IsoTV: processing and visualizing functional features of translated transcript isoforms
por: Annaldasula, Siddharth, et al.
Publicado: (2021)

Updates to the RMAP short-read mapping software
por: Smith, Andrew D., et al.
Publicado: (2009)

NanoPack: visualizing and processing long-read sequencing data
por: De Coster, Wouter, et al.
Publicado: (2018)

SnoopCGH: software for visualizing comparative genomic hybridization data
por: Almagro-Garcia, Jacob, et al.
Publicado: (2009)

ScisorWiz: visualizing differential isoform expression in single-cell long-read data
por: Stein, Alexander N, et al.
Publicado: (2022)

OMTools: a software package for visualizing and processing optical mapping data
por: Leung, Alden King-Yung, et al.
Publicado: (2017)

Unified Software Solution for Efficient SPR Data Analysis in Drug Research
por: Dahl, Göran, et al.
Publicado: (2016)

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians
por: van der Velde, K Joeri, et al.
Publicado: (2019)

SVA: software for annotating and visualizing sequenced human genomes
por: Ge, Dongliang, et al.
Publicado: (2011)

BioContainers: an open-source and community-driven framework for software standardization
por: da Veiga Leprevost, Felipe, et al.
Publicado: (2017)

HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens
por: Scheeder, Christian, et al.
Publicado: (2017)

Swan: a library for the analysis and visualization of long-read transcriptomes
por: Reese, Fairlie, et al.
Publicado: (2020)

ggCyto: next generation open-source visualization software for cytometry
por: Van, Phu, et al.
Publicado: (2018)

Deuteros: software for rapid analysis and visualization of data from differential hydrogen deuterium exchange-mass spectrometry
por: Lau, Andy M C, et al.
Publicado: (2019)

A Python-based educational software tool for visualizing bioinformatics alignment algorithms
por: Khatizah, Elis, et al.
Publicado: (2023)

Surfaces: a software to quantify and visualize interactions within and between proteins and ligands
por: Teruel, Natália, et al.
Publicado: (2023)

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context
por: Martin, Olivier, et al.
Publicado: (2009)

pyPheWAS Explorer: a visualization tool for exploratory analysis of phenome-disease associations
por: Kerley, Cailey I, et al.
Publicado: (2023)

ppBAM: ProteinPaint BAM track for read alignment visualization and variant genotyping
por: Paul, Robin, et al.
Publicado: (2023)

PanExplorer: a web-based tool for exploratory analysis and visualization of bacterial pan-genomes
por: Dereeper, Alexis, et al.
Publicado: (2022)

circtools—a one-stop software solution for circular RNA research
por: Jakobi, Tobias, et al.
Publicado: (2019)

TraceTrack, an open-source software for batch processing, alignment and visualization of sanger sequencing chromatograms
por: Brazdilova, Kveta, et al.
Publicado: (2023)

spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data
por: Creed, Jordan H, et al.
Publicado: (2021)

RLM: fast and simplified extraction of read-level methylation metrics from bisulfite sequencing data
por: Hetzel, Sara, et al.
Publicado: (2021)

Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
por: Welty, Leah J, et al.
Publicado: (2020)

SmartR: an open-source platform for interactive visual analytics for translational research data
por: Herzinger, Sascha, et al.
Publicado: (2017)

Read trimming is not required for mapping and quantification of RNA-seq reads at the gene level
por: Liao, Yang, et al.
Publicado: (2020)

ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads
por: Hunt, Martin, et al.
Publicado: (2022)

FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting
por: Waithe, Dominic, et al.
Publicado: (2016)

Faltwerk: a library for spatial exploratory data analysis of protein structures
por: Viehweger, Adrian
Publicado: (2023)

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
por: Peakall, Rod, et al.
Publicado: (2012)

X-MATE: a flexible system for mapping short read data
por: Wood, David L. A., et al.
Publicado: (2011)

phippery: a software suite for PhIP-Seq data analysis
por: Galloway, Jared G, et al.
Publicado: (2023)

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R
por: Dvinge, Heidi, et al.
Publicado: (2009)

SeeVis—3D space-time cube rendering for visualization of microfluidics image data
por: Hattab, Georges, et al.
Publicado: (2019)

BamView: viewing mapped read alignment data in the context of the reference sequence
por: Carver, Tim, et al.
Publicado: (2010)

OrfM: a fast open reading frame predictor for metagenomic data
por: Woodcroft, Ben J., et al.
Publicado: (2016)

LRez: a C++ API and toolkit for analyzing and managing Linked-Reads data
por: Morisse, Pierre, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_gc4gvm4qk9a449env43lele0a4