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ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data
ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies.
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
American Society for Microbiology
2021
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7936641/ https://www.ncbi.nlm.nih.gov/pubmed/33664143 http://dx.doi.org/10.1128/MRA.01468-20 |
| _version_ | 1783661228364660736 |
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| author | Wylie, Todd N. Wylie, Kristine M. |
| author_facet | Wylie, Todd N. Wylie, Kristine M. |
| author_sort | Wylie, Todd N. |
| collection | PubMed |
| description | ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies. |
| format | Online Article Text |
| id | pubmed-7936641 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2021 |
| publisher | American Society for Microbiology |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-79366412021-03-10 ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data Wylie, Todd N. Wylie, Kristine M. Microbiol Resour Announc Databases and Software ViroMatch is an automated pipeline that takes metagenomic sequencing reads as input and performs iterative nucleotide and translated nucleotide mapping to identify viral sequences. We provide a Docker image for ViroMatch, so that users will not have to install dependencies. American Society for Microbiology 2021-03-04 /pmc/articles/PMC7936641/ /pubmed/33664143 http://dx.doi.org/10.1128/MRA.01468-20 Text en Copyright © 2021 Wylie and Wylie. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
| spellingShingle | Databases and Software Wylie, Todd N. Wylie, Kristine M. ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title | ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title_full | ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title_fullStr | ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title_full_unstemmed | ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title_short | ViroMatch: A Computational Pipeline for the Detection of Viral Sequences from Complex Metagenomic Data |
| title_sort | viromatch: a computational pipeline for the detection of viral sequences from complex metagenomic data |
| topic | Databases and Software |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7936641/ https://www.ncbi.nlm.nih.gov/pubmed/33664143 http://dx.doi.org/10.1128/MRA.01468-20 |
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