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Signs of biofilm formation in the genome of Labrenzia sp. PO1

Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hou...

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Autores principales: Zaynab, Madiha, Chen, Huirong, Chen, Yufei, Ouyang, Liao, Yang, Xuewei, Hu, Zhangli, Li, Shuangfei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7938128/
https://www.ncbi.nlm.nih.gov/pubmed/33732076
http://dx.doi.org/10.1016/j.sjbs.2020.12.041
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author Zaynab, Madiha
Chen, Huirong
Chen, Yufei
Ouyang, Liao
Yang, Xuewei
Hu, Zhangli
Li, Shuangfei
author_facet Zaynab, Madiha
Chen, Huirong
Chen, Yufei
Ouyang, Liao
Yang, Xuewei
Hu, Zhangli
Li, Shuangfei
author_sort Zaynab, Madiha
collection PubMed
description Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hours. The whole genome of 6.21813 Mb of Labrezia sp. PO1 was sequenced and assembled into 15 scaffolds and 16 contigs, each with minimum and maximum lengths of 644 and 1,744,114 Mb. A total of 3,566 genes were classified into five pathways and 31 pathway groups. Of them, 521 genes encoded biofilm formation proteins, quorum sensing (QS) proteins, and ABC transporters. Gene Ontology annotation identified 49,272 genes that were involved in biological processes (33,425 genes), cellular components (7,031genes), and molecular function (7,816 genes). We recognised genes involved in bacterial quorum sensing, attachment, motility, and chemotaxis to investigate bacteria's ability to interact with the diatom phycosphere. As revealed by KEGG pathway analysis, several genes encoding ABC transporters exhibited a significant role during the growth and development of Labrenzia sp. PO1, indicating that ABC transporters may be involved in signalling pathways that enhance growth and biofilm formation.
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spelling pubmed-79381282021-03-16 Signs of biofilm formation in the genome of Labrenzia sp. PO1 Zaynab, Madiha Chen, Huirong Chen, Yufei Ouyang, Liao Yang, Xuewei Hu, Zhangli Li, Shuangfei Saudi J Biol Sci Original Article Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hours. The whole genome of 6.21813 Mb of Labrezia sp. PO1 was sequenced and assembled into 15 scaffolds and 16 contigs, each with minimum and maximum lengths of 644 and 1,744,114 Mb. A total of 3,566 genes were classified into five pathways and 31 pathway groups. Of them, 521 genes encoded biofilm formation proteins, quorum sensing (QS) proteins, and ABC transporters. Gene Ontology annotation identified 49,272 genes that were involved in biological processes (33,425 genes), cellular components (7,031genes), and molecular function (7,816 genes). We recognised genes involved in bacterial quorum sensing, attachment, motility, and chemotaxis to investigate bacteria's ability to interact with the diatom phycosphere. As revealed by KEGG pathway analysis, several genes encoding ABC transporters exhibited a significant role during the growth and development of Labrenzia sp. PO1, indicating that ABC transporters may be involved in signalling pathways that enhance growth and biofilm formation. Elsevier 2021-03 2020-12-31 /pmc/articles/PMC7938128/ /pubmed/33732076 http://dx.doi.org/10.1016/j.sjbs.2020.12.041 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Zaynab, Madiha
Chen, Huirong
Chen, Yufei
Ouyang, Liao
Yang, Xuewei
Hu, Zhangli
Li, Shuangfei
Signs of biofilm formation in the genome of Labrenzia sp. PO1
title Signs of biofilm formation in the genome of Labrenzia sp. PO1
title_full Signs of biofilm formation in the genome of Labrenzia sp. PO1
title_fullStr Signs of biofilm formation in the genome of Labrenzia sp. PO1
title_full_unstemmed Signs of biofilm formation in the genome of Labrenzia sp. PO1
title_short Signs of biofilm formation in the genome of Labrenzia sp. PO1
title_sort signs of biofilm formation in the genome of labrenzia sp. po1
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7938128/
https://www.ncbi.nlm.nih.gov/pubmed/33732076
http://dx.doi.org/10.1016/j.sjbs.2020.12.041
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