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Signs of biofilm formation in the genome of Labrenzia sp. PO1
Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hou...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7938128/ https://www.ncbi.nlm.nih.gov/pubmed/33732076 http://dx.doi.org/10.1016/j.sjbs.2020.12.041 |
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author | Zaynab, Madiha Chen, Huirong Chen, Yufei Ouyang, Liao Yang, Xuewei Hu, Zhangli Li, Shuangfei |
author_facet | Zaynab, Madiha Chen, Huirong Chen, Yufei Ouyang, Liao Yang, Xuewei Hu, Zhangli Li, Shuangfei |
author_sort | Zaynab, Madiha |
collection | PubMed |
description | Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hours. The whole genome of 6.21813 Mb of Labrezia sp. PO1 was sequenced and assembled into 15 scaffolds and 16 contigs, each with minimum and maximum lengths of 644 and 1,744,114 Mb. A total of 3,566 genes were classified into five pathways and 31 pathway groups. Of them, 521 genes encoded biofilm formation proteins, quorum sensing (QS) proteins, and ABC transporters. Gene Ontology annotation identified 49,272 genes that were involved in biological processes (33,425 genes), cellular components (7,031genes), and molecular function (7,816 genes). We recognised genes involved in bacterial quorum sensing, attachment, motility, and chemotaxis to investigate bacteria's ability to interact with the diatom phycosphere. As revealed by KEGG pathway analysis, several genes encoding ABC transporters exhibited a significant role during the growth and development of Labrenzia sp. PO1, indicating that ABC transporters may be involved in signalling pathways that enhance growth and biofilm formation. |
format | Online Article Text |
id | pubmed-7938128 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-79381282021-03-16 Signs of biofilm formation in the genome of Labrenzia sp. PO1 Zaynab, Madiha Chen, Huirong Chen, Yufei Ouyang, Liao Yang, Xuewei Hu, Zhangli Li, Shuangfei Saudi J Biol Sci Original Article Labrenzia sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the Labrenzia sp. PO1 strain capable of forming biofilm, from the A. sanguinea culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hours. The whole genome of 6.21813 Mb of Labrezia sp. PO1 was sequenced and assembled into 15 scaffolds and 16 contigs, each with minimum and maximum lengths of 644 and 1,744,114 Mb. A total of 3,566 genes were classified into five pathways and 31 pathway groups. Of them, 521 genes encoded biofilm formation proteins, quorum sensing (QS) proteins, and ABC transporters. Gene Ontology annotation identified 49,272 genes that were involved in biological processes (33,425 genes), cellular components (7,031genes), and molecular function (7,816 genes). We recognised genes involved in bacterial quorum sensing, attachment, motility, and chemotaxis to investigate bacteria's ability to interact with the diatom phycosphere. As revealed by KEGG pathway analysis, several genes encoding ABC transporters exhibited a significant role during the growth and development of Labrenzia sp. PO1, indicating that ABC transporters may be involved in signalling pathways that enhance growth and biofilm formation. Elsevier 2021-03 2020-12-31 /pmc/articles/PMC7938128/ /pubmed/33732076 http://dx.doi.org/10.1016/j.sjbs.2020.12.041 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Article Zaynab, Madiha Chen, Huirong Chen, Yufei Ouyang, Liao Yang, Xuewei Hu, Zhangli Li, Shuangfei Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title | Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title_full | Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title_fullStr | Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title_full_unstemmed | Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title_short | Signs of biofilm formation in the genome of Labrenzia sp. PO1 |
title_sort | signs of biofilm formation in the genome of labrenzia sp. po1 |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7938128/ https://www.ncbi.nlm.nih.gov/pubmed/33732076 http://dx.doi.org/10.1016/j.sjbs.2020.12.041 |
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