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Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148

Plant C2 domain proteins play essential biological functions in numerous plants. In this study, 180 soybean C2 domain genes were identified by screening. Phylogenetic relationship analysis revealed that C2 domain genes fell into three distinct groups with diverged gene structure and conserved functi...

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Autores principales: Sun, Yue, Zhao, Juan-Ying, Li, Yi-Tong, Zhang, Pei-Gen, Wang, Shu-Ping, Guo, Jun, Chen, Jun, Zhou, Yong-Bin, Chen, Ming, Ma, You-Zhi, Fang, Zheng-Wu, Xu, Zhao-Shi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7939022/
https://www.ncbi.nlm.nih.gov/pubmed/33692816
http://dx.doi.org/10.3389/fpls.2021.620544
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author Sun, Yue
Zhao, Juan-Ying
Li, Yi-Tong
Zhang, Pei-Gen
Wang, Shu-Ping
Guo, Jun
Chen, Jun
Zhou, Yong-Bin
Chen, Ming
Ma, You-Zhi
Fang, Zheng-Wu
Xu, Zhao-Shi
author_facet Sun, Yue
Zhao, Juan-Ying
Li, Yi-Tong
Zhang, Pei-Gen
Wang, Shu-Ping
Guo, Jun
Chen, Jun
Zhou, Yong-Bin
Chen, Ming
Ma, You-Zhi
Fang, Zheng-Wu
Xu, Zhao-Shi
author_sort Sun, Yue
collection PubMed
description Plant C2 domain proteins play essential biological functions in numerous plants. In this study, 180 soybean C2 domain genes were identified by screening. Phylogenetic relationship analysis revealed that C2 domain genes fell into three distinct groups with diverged gene structure and conserved functional domain. Chromosomal location analysis indicated that C2 domain genes mapped to 20 chromosomes. The transcript profiles based on RNA-seq data showed that GmC2-58, GmC2-88, and GmC2-148 had higher levels of expression under salt, drought, and abscisic acid (ABA) treatments. GmC2-148, encoding a cell membrane-localized protein, had the highest level of response to various treatments according to real-time quantitative polymerase chain reaction (RT-qPCR) analysis. Under salt and drought stresses, the soybean plants with GmC2-148 transgenic hairy roots showed delayed leaf rolling, a higher content of proline (Pro), and lower contents of H(2)O(2), O(2–) and malondialdehyde (MDA) compared to those of the empty vector (EV) plants. The results of transgenic Arabidopsis in salt and drought treatments were consistent with those in soybean treatments. In addition, the soybean plants with GmC2-148 transgenic hairy roots increased transcript levels of several abiotic stress-related marker genes, including COR47, NCDE3, NAC11, WRKY13, DREB2A, MYB84, bZIP44, and KIN1 which resulted in enhanced abiotic stress tolerance in soybean. These results indicate that C2 domain genes are involved in response to salt and drought stresses, and this study provides a genome-wide analysis of the C2 domain family in soybean.
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spelling pubmed-79390222021-03-09 Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148 Sun, Yue Zhao, Juan-Ying Li, Yi-Tong Zhang, Pei-Gen Wang, Shu-Ping Guo, Jun Chen, Jun Zhou, Yong-Bin Chen, Ming Ma, You-Zhi Fang, Zheng-Wu Xu, Zhao-Shi Front Plant Sci Plant Science Plant C2 domain proteins play essential biological functions in numerous plants. In this study, 180 soybean C2 domain genes were identified by screening. Phylogenetic relationship analysis revealed that C2 domain genes fell into three distinct groups with diverged gene structure and conserved functional domain. Chromosomal location analysis indicated that C2 domain genes mapped to 20 chromosomes. The transcript profiles based on RNA-seq data showed that GmC2-58, GmC2-88, and GmC2-148 had higher levels of expression under salt, drought, and abscisic acid (ABA) treatments. GmC2-148, encoding a cell membrane-localized protein, had the highest level of response to various treatments according to real-time quantitative polymerase chain reaction (RT-qPCR) analysis. Under salt and drought stresses, the soybean plants with GmC2-148 transgenic hairy roots showed delayed leaf rolling, a higher content of proline (Pro), and lower contents of H(2)O(2), O(2–) and malondialdehyde (MDA) compared to those of the empty vector (EV) plants. The results of transgenic Arabidopsis in salt and drought treatments were consistent with those in soybean treatments. In addition, the soybean plants with GmC2-148 transgenic hairy roots increased transcript levels of several abiotic stress-related marker genes, including COR47, NCDE3, NAC11, WRKY13, DREB2A, MYB84, bZIP44, and KIN1 which resulted in enhanced abiotic stress tolerance in soybean. These results indicate that C2 domain genes are involved in response to salt and drought stresses, and this study provides a genome-wide analysis of the C2 domain family in soybean. Frontiers Media S.A. 2021-02-16 /pmc/articles/PMC7939022/ /pubmed/33692816 http://dx.doi.org/10.3389/fpls.2021.620544 Text en Copyright © 2021 Sun, Zhao, Li, Zhang, Wang, Guo, Chen, Zhou, Chen, Ma, Fang and Xu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Sun, Yue
Zhao, Juan-Ying
Li, Yi-Tong
Zhang, Pei-Gen
Wang, Shu-Ping
Guo, Jun
Chen, Jun
Zhou, Yong-Bin
Chen, Ming
Ma, You-Zhi
Fang, Zheng-Wu
Xu, Zhao-Shi
Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title_full Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title_fullStr Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title_full_unstemmed Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title_short Genome-Wide Analysis of the C2 Domain Family in Soybean and Identification of a Putative Abiotic Stress Response Gene GmC2-148
title_sort genome-wide analysis of the c2 domain family in soybean and identification of a putative abiotic stress response gene gmc2-148
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7939022/
https://www.ncbi.nlm.nih.gov/pubmed/33692816
http://dx.doi.org/10.3389/fpls.2021.620544
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