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MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis
Colon cancer is one of the most common cancers in the world. To identify the candidate genes in the carcinogenesis and progression of colon cancer, the microarray datasets GSE10950, GSE44861 and GSE74602 were downloaded from the Gene Expression Omnibus (GEO) database. The differentially expressed ge...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7939218/ https://www.ncbi.nlm.nih.gov/pubmed/33655961 http://dx.doi.org/10.1097/MD.0000000000024953 |
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author | Chen, Li Ke, Xueying |
author_facet | Chen, Li Ke, Xueying |
author_sort | Chen, Li |
collection | PubMed |
description | Colon cancer is one of the most common cancers in the world. To identify the candidate genes in the carcinogenesis and progression of colon cancer, the microarray datasets GSE10950, GSE44861 and GSE74602 were downloaded from the Gene Expression Omnibus (GEO) database. The differentially expressed genes (DEGs) were identified, and functional enrichment analyses were performed. A total of 176 DEGs were identified, consisting of 55 genes upregulated and 121 genes downregulated in colon cancer tissues compared to non-cancerous tissues. The DEGs were mainly enriched in mineral absorption, nitrogen metabolism and complement and coagulation cascades. By using STRING database analysis, we constructed a coexpression network composed of 140 nodes and 280 edges for the DEGs with a combined score >0.4 and a significant interaction relation. Thirteen hub genes were identified, and poor OS of patients was only associated with high expression of Matrix Metallopeptidase 7 (MMP7), which may be involved in the carcinogenesis, invasion or recurrence of colon cancer. In conclusion, we propose that the DEGs and hub genes identified in the present study may be regarded as diagnostic biomarkers for colon cancer. Moreover, the overexpression of MMP7 may correlate with poor prognosis. |
format | Online Article Text |
id | pubmed-7939218 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-79392182021-03-08 MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis Chen, Li Ke, Xueying Medicine (Baltimore) 5700 Colon cancer is one of the most common cancers in the world. To identify the candidate genes in the carcinogenesis and progression of colon cancer, the microarray datasets GSE10950, GSE44861 and GSE74602 were downloaded from the Gene Expression Omnibus (GEO) database. The differentially expressed genes (DEGs) were identified, and functional enrichment analyses were performed. A total of 176 DEGs were identified, consisting of 55 genes upregulated and 121 genes downregulated in colon cancer tissues compared to non-cancerous tissues. The DEGs were mainly enriched in mineral absorption, nitrogen metabolism and complement and coagulation cascades. By using STRING database analysis, we constructed a coexpression network composed of 140 nodes and 280 edges for the DEGs with a combined score >0.4 and a significant interaction relation. Thirteen hub genes were identified, and poor OS of patients was only associated with high expression of Matrix Metallopeptidase 7 (MMP7), which may be involved in the carcinogenesis, invasion or recurrence of colon cancer. In conclusion, we propose that the DEGs and hub genes identified in the present study may be regarded as diagnostic biomarkers for colon cancer. Moreover, the overexpression of MMP7 may correlate with poor prognosis. Lippincott Williams & Wilkins 2021-03-05 /pmc/articles/PMC7939218/ /pubmed/33655961 http://dx.doi.org/10.1097/MD.0000000000024953 Text en Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc. http://creativecommons.org/licenses/by-nc/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC), where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. http://creativecommons.org/licenses/by-nc/4.0 |
spellingShingle | 5700 Chen, Li Ke, Xueying MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title | MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title_full | MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title_fullStr | MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title_full_unstemmed | MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title_short | MMP7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
title_sort | mmp7 as a potential biomarker of colon cancer and its prognostic value by bioinformatics analysis |
topic | 5700 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7939218/ https://www.ncbi.nlm.nih.gov/pubmed/33655961 http://dx.doi.org/10.1097/MD.0000000000024953 |
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