Cargando…

A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs

Long non-coding RNAs (lncRNAs) have been shown to alter immune responses, thus contributing to the pathobiology of autoimmune conditions. We investigated the expression levels of ANRIL, PICART1, MALAT1, CCAT1, CCAT2, and CCHE1 lncRNAs in acute and chronic inflammatory demyelinating polyneuropathy (A...

Descripción completa

Detalles Bibliográficos
Autores principales: Hussen, Bashdar Mahmud, Nicknafs, Fwad, Hidayat, Hazha Jamal, Sayad, Arezou, Ghafouri-Fard, Soudeh, Taheri, Mohammad
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7940672/
https://www.ncbi.nlm.nih.gov/pubmed/33708228
http://dx.doi.org/10.3389/fimmu.2021.643615
_version_ 1783661989556387840
author Hussen, Bashdar Mahmud
Nicknafs, Fwad
Hidayat, Hazha Jamal
Sayad, Arezou
Ghafouri-Fard, Soudeh
Taheri, Mohammad
author_facet Hussen, Bashdar Mahmud
Nicknafs, Fwad
Hidayat, Hazha Jamal
Sayad, Arezou
Ghafouri-Fard, Soudeh
Taheri, Mohammad
author_sort Hussen, Bashdar Mahmud
collection PubMed
description Long non-coding RNAs (lncRNAs) have been shown to alter immune responses, thus contributing to the pathobiology of autoimmune conditions. We investigated the expression levels of ANRIL, PICART1, MALAT1, CCAT1, CCAT2, and CCHE1 lncRNAs in acute and chronic inflammatory demyelinating polyneuropathy (AIDP and CIDP). ANRIL, PICART1, MALAT1, CCAT1, CCAT2, and CCHE1 lncRNAs were significantly downregulated in individuals with both AIDP and CIDP compared with unaffected individuals. Gender-based comparisons also verified such downregulations in both male and female subjects compared with sex-matched unaffected controls for all lncRNAs. There was no significant difference in the expression of any of the lncRNAs between cases with AIDP and cases with CIDP. While the expression levels of ANRIL and PICART1 were significantly correlated in healthy subjects (r = 0.86, p = 8.5E-16), similar analysis in cases with AIDP and CIDP revealed no significant correlation. The most robust correlation among patients was detected between ANRIL and MALAT1 lncRNAs (r = 0.59, p = 3.52E-6). ANRIL, MALAT1, and PICART1 had the diagnostic power of 0.96, 0.94, and 0.92 in distinguishing between cases with CIDP and controls, respectively. A combination of all lncRNAs resulted in 0.95 diagnostic power with a sensitivity of 0.85 and specificity of 0.96 for this purpose. Diagnostic power values of these lncRNAs in differentiation between cases with AIDP and controls were 0.98, 0.95, and 0.93, respectively. The combinatorial diagnostic power reached 0.98 for differentiation between cases with AIDP and controls. The six-lncRNA panel could differentiate combined cases with AIDP and CIDP from controls with area under the curve (AUC), sensitivity, and specificity values of 0.97, 0.90, and 0.96, respectively. Collectively, the lncRNA panel is suggested as a sensitive and specific diagnostic panel for acquired immune-mediated polyneuropathies.
format Online
Article
Text
id pubmed-7940672
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-79406722021-03-10 A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs Hussen, Bashdar Mahmud Nicknafs, Fwad Hidayat, Hazha Jamal Sayad, Arezou Ghafouri-Fard, Soudeh Taheri, Mohammad Front Immunol Immunology Long non-coding RNAs (lncRNAs) have been shown to alter immune responses, thus contributing to the pathobiology of autoimmune conditions. We investigated the expression levels of ANRIL, PICART1, MALAT1, CCAT1, CCAT2, and CCHE1 lncRNAs in acute and chronic inflammatory demyelinating polyneuropathy (AIDP and CIDP). ANRIL, PICART1, MALAT1, CCAT1, CCAT2, and CCHE1 lncRNAs were significantly downregulated in individuals with both AIDP and CIDP compared with unaffected individuals. Gender-based comparisons also verified such downregulations in both male and female subjects compared with sex-matched unaffected controls for all lncRNAs. There was no significant difference in the expression of any of the lncRNAs between cases with AIDP and cases with CIDP. While the expression levels of ANRIL and PICART1 were significantly correlated in healthy subjects (r = 0.86, p = 8.5E-16), similar analysis in cases with AIDP and CIDP revealed no significant correlation. The most robust correlation among patients was detected between ANRIL and MALAT1 lncRNAs (r = 0.59, p = 3.52E-6). ANRIL, MALAT1, and PICART1 had the diagnostic power of 0.96, 0.94, and 0.92 in distinguishing between cases with CIDP and controls, respectively. A combination of all lncRNAs resulted in 0.95 diagnostic power with a sensitivity of 0.85 and specificity of 0.96 for this purpose. Diagnostic power values of these lncRNAs in differentiation between cases with AIDP and controls were 0.98, 0.95, and 0.93, respectively. The combinatorial diagnostic power reached 0.98 for differentiation between cases with AIDP and controls. The six-lncRNA panel could differentiate combined cases with AIDP and CIDP from controls with area under the curve (AUC), sensitivity, and specificity values of 0.97, 0.90, and 0.96, respectively. Collectively, the lncRNA panel is suggested as a sensitive and specific diagnostic panel for acquired immune-mediated polyneuropathies. Frontiers Media S.A. 2021-02-23 /pmc/articles/PMC7940672/ /pubmed/33708228 http://dx.doi.org/10.3389/fimmu.2021.643615 Text en Copyright © 2021 Hussen, Nicknafs, Hidayat, Sayad, Ghafouri-Fard and Taheri. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Hussen, Bashdar Mahmud
Nicknafs, Fwad
Hidayat, Hazha Jamal
Sayad, Arezou
Ghafouri-Fard, Soudeh
Taheri, Mohammad
A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title_full A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title_fullStr A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title_full_unstemmed A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title_short A Diagnostic Panel for Acquired Immune-Mediated Polyneuropathies Based on the Expression of lncRNAs
title_sort diagnostic panel for acquired immune-mediated polyneuropathies based on the expression of lncrnas
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7940672/
https://www.ncbi.nlm.nih.gov/pubmed/33708228
http://dx.doi.org/10.3389/fimmu.2021.643615
work_keys_str_mv AT hussenbashdarmahmud adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT nicknafsfwad adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT hidayathazhajamal adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT sayadarezou adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT ghafourifardsoudeh adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT taherimohammad adiagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT hussenbashdarmahmud diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT nicknafsfwad diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT hidayathazhajamal diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT sayadarezou diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT ghafourifardsoudeh diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas
AT taherimohammad diagnosticpanelforacquiredimmunemediatedpolyneuropathiesbasedontheexpressionoflncrnas