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Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing
BACKGROUND: Acute myocardial infarction (AMI) is one of the most common global causes of death. Although considerable progress has been made in AMI diagnosis, there remains an urgent need for novel diagnostic biomarkers for its prevention and treatment. Functional exosomal microRNAs (miRNAs) are rec...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7940945/ https://www.ncbi.nlm.nih.gov/pubmed/33708846 http://dx.doi.org/10.21037/atm-20-2337 |
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author | Guo, Mei Li, Rui Yang, Linfeng Zhu, Qianhua Han, Mo Chen, Zhichao Ruan, Fengying Yuan, Yongxian Liu, Zhenni Huang, Binbin Bai, Mingzhou Wang, Hongqi Zhang, Chao Tang, Chong |
author_facet | Guo, Mei Li, Rui Yang, Linfeng Zhu, Qianhua Han, Mo Chen, Zhichao Ruan, Fengying Yuan, Yongxian Liu, Zhenni Huang, Binbin Bai, Mingzhou Wang, Hongqi Zhang, Chao Tang, Chong |
author_sort | Guo, Mei |
collection | PubMed |
description | BACKGROUND: Acute myocardial infarction (AMI) is one of the most common global causes of death. Although considerable progress has been made in AMI diagnosis, there remains an urgent need for novel diagnostic biomarkers for its prevention and treatment. Functional exosomal microRNAs (miRNAs) are recognized as potential biomarkers in many diseases. This study’s objective was to identify specific plasma exosomal miRNAs with biomarker potential for early AMI detection. METHODS: Exosomes from the plasma of 26 coronary artery disease (CAD) patients, 55 AMI patients, and 37 healthy controls were isolated and characterized by transmission electron microcopy (TEM), western blotting, and nanoparticle tracking analysis (NTA). The miRNAs were purified from exosomes, and unique molecular identifier (UMI) small RNA sequencing was performed. The random forest (RF) model was trained to predict potential biomarkers. RESULTS: NTA demonstrated that nanoparticle concentration did not change after AMI, while nanoparticle size distribution significantly decreased. The CAD and AMI groups’ miRNA expression profiles significantly differed from the healthy group’s profile. The RF classifier could be used to distinguish the healthy group from the AMI group, but could not be used to distinguish the CAD group from the other groups, which caused a high classification error rate. Eighteen miRNAs were selected as biomarkers based on their RF classifier significance. The diagnostic accuracy of 18 miRNAs was evaluated using AUC values of 0.93, 0.87, and 0.75 to detect healthy controls, AMI, and CAD, respectively. CONCLUSIONS: Nanoparticle diameter and the 18 miRNAs may serve as simple and accessible fingerprints for early AMI diagnosis. |
format | Online Article Text |
id | pubmed-7940945 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-79409452021-03-10 Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing Guo, Mei Li, Rui Yang, Linfeng Zhu, Qianhua Han, Mo Chen, Zhichao Ruan, Fengying Yuan, Yongxian Liu, Zhenni Huang, Binbin Bai, Mingzhou Wang, Hongqi Zhang, Chao Tang, Chong Ann Transl Med Original Article BACKGROUND: Acute myocardial infarction (AMI) is one of the most common global causes of death. Although considerable progress has been made in AMI diagnosis, there remains an urgent need for novel diagnostic biomarkers for its prevention and treatment. Functional exosomal microRNAs (miRNAs) are recognized as potential biomarkers in many diseases. This study’s objective was to identify specific plasma exosomal miRNAs with biomarker potential for early AMI detection. METHODS: Exosomes from the plasma of 26 coronary artery disease (CAD) patients, 55 AMI patients, and 37 healthy controls were isolated and characterized by transmission electron microcopy (TEM), western blotting, and nanoparticle tracking analysis (NTA). The miRNAs were purified from exosomes, and unique molecular identifier (UMI) small RNA sequencing was performed. The random forest (RF) model was trained to predict potential biomarkers. RESULTS: NTA demonstrated that nanoparticle concentration did not change after AMI, while nanoparticle size distribution significantly decreased. The CAD and AMI groups’ miRNA expression profiles significantly differed from the healthy group’s profile. The RF classifier could be used to distinguish the healthy group from the AMI group, but could not be used to distinguish the CAD group from the other groups, which caused a high classification error rate. Eighteen miRNAs were selected as biomarkers based on their RF classifier significance. The diagnostic accuracy of 18 miRNAs was evaluated using AUC values of 0.93, 0.87, and 0.75 to detect healthy controls, AMI, and CAD, respectively. CONCLUSIONS: Nanoparticle diameter and the 18 miRNAs may serve as simple and accessible fingerprints for early AMI diagnosis. AME Publishing Company 2021-02 /pmc/articles/PMC7940945/ /pubmed/33708846 http://dx.doi.org/10.21037/atm-20-2337 Text en 2021 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Original Article Guo, Mei Li, Rui Yang, Linfeng Zhu, Qianhua Han, Mo Chen, Zhichao Ruan, Fengying Yuan, Yongxian Liu, Zhenni Huang, Binbin Bai, Mingzhou Wang, Hongqi Zhang, Chao Tang, Chong Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title | Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title_full | Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title_fullStr | Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title_full_unstemmed | Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title_short | Evaluation of exosomal miRNAs as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
title_sort | evaluation of exosomal mirnas as potential diagnostic biomarkers for acute myocardial infarction using next-generation sequencing |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7940945/ https://www.ncbi.nlm.nih.gov/pubmed/33708846 http://dx.doi.org/10.21037/atm-20-2337 |
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