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Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation

OBJECTIVES: Circadian rhythm controls complicated physiological activities in organisms. Circadian clock genes have been related to tumour progression, but its role in glioma is unknown. Therefore, we explored the relationship between dysregulated circadian clock genes and glioma progression. MATERI...

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Autores principales: Wang, Zeyu, Su, Guanhua, Dai, Ziyu, Meng, Ming, Zhang, Hao, Fan, Fan, Liu, Zhengzheng, Zhang, Longbo, Weygant, Nathaniel, He, Fengqiong, Fang, Ning, Zhang, Liyang, Cheng, Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7941241/
https://www.ncbi.nlm.nih.gov/pubmed/33442944
http://dx.doi.org/10.1111/cpr.12988
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author Wang, Zeyu
Su, Guanhua
Dai, Ziyu
Meng, Ming
Zhang, Hao
Fan, Fan
Liu, Zhengzheng
Zhang, Longbo
Weygant, Nathaniel
He, Fengqiong
Fang, Ning
Zhang, Liyang
Cheng, Quan
author_facet Wang, Zeyu
Su, Guanhua
Dai, Ziyu
Meng, Ming
Zhang, Hao
Fan, Fan
Liu, Zhengzheng
Zhang, Longbo
Weygant, Nathaniel
He, Fengqiong
Fang, Ning
Zhang, Liyang
Cheng, Quan
author_sort Wang, Zeyu
collection PubMed
description OBJECTIVES: Circadian rhythm controls complicated physiological activities in organisms. Circadian clock genes have been related to tumour progression, but its role in glioma is unknown. Therefore, we explored the relationship between dysregulated circadian clock genes and glioma progression. MATERIALS AND METHODS: Samples were divided into different groups based on circadian clock gene expression in training dataset (n = 672) and we verified the results in other four validating datasets (n = 1570). The GO and GSEA enrichment analysis were conducted to explore potential mechanism of how circadian clock genes affected glioma progression. The single‐cell RNA‐Seq analysis was conducted to verified previous results. The immune landscape was evaluated by the ssGSEA and CIBERSORT algorithm. Cell proliferation and viability were confirmed by the CCK8 assay, colony‐forming assay and flow cytometry. RESULTS: The cluster and risk model based on circadian clock gene expression can predict survival outcome. Samples were scoring by the least absolute shrinkage and selection operator regression analysis, and high scoring tumour was associated with worse survival outcome. Samples in high‐risk group manifested higher activation of immune pathway and cell cycle. Tumour immune landscape suggested high‐risk tumour infiltrated more immunocytes and more sensitivity to immunotherapy. Interfering TIMELESS expression affected circadian clock gene expression, inhibited tumour cell proliferation and arrested cell cycle at the G0/G1 phase. CONCLUSIONS: Dysregulated circadian clock gene expression can affect glioma progression by affecting tumour immune landscape and cell cycle. The risk model can predict glioma survival outcome, and this model can also be applied to pan‐cancer.
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spelling pubmed-79412412021-03-16 Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation Wang, Zeyu Su, Guanhua Dai, Ziyu Meng, Ming Zhang, Hao Fan, Fan Liu, Zhengzheng Zhang, Longbo Weygant, Nathaniel He, Fengqiong Fang, Ning Zhang, Liyang Cheng, Quan Cell Prolif Original Articles OBJECTIVES: Circadian rhythm controls complicated physiological activities in organisms. Circadian clock genes have been related to tumour progression, but its role in glioma is unknown. Therefore, we explored the relationship between dysregulated circadian clock genes and glioma progression. MATERIALS AND METHODS: Samples were divided into different groups based on circadian clock gene expression in training dataset (n = 672) and we verified the results in other four validating datasets (n = 1570). The GO and GSEA enrichment analysis were conducted to explore potential mechanism of how circadian clock genes affected glioma progression. The single‐cell RNA‐Seq analysis was conducted to verified previous results. The immune landscape was evaluated by the ssGSEA and CIBERSORT algorithm. Cell proliferation and viability were confirmed by the CCK8 assay, colony‐forming assay and flow cytometry. RESULTS: The cluster and risk model based on circadian clock gene expression can predict survival outcome. Samples were scoring by the least absolute shrinkage and selection operator regression analysis, and high scoring tumour was associated with worse survival outcome. Samples in high‐risk group manifested higher activation of immune pathway and cell cycle. Tumour immune landscape suggested high‐risk tumour infiltrated more immunocytes and more sensitivity to immunotherapy. Interfering TIMELESS expression affected circadian clock gene expression, inhibited tumour cell proliferation and arrested cell cycle at the G0/G1 phase. CONCLUSIONS: Dysregulated circadian clock gene expression can affect glioma progression by affecting tumour immune landscape and cell cycle. The risk model can predict glioma survival outcome, and this model can also be applied to pan‐cancer. John Wiley and Sons Inc. 2021-01-13 /pmc/articles/PMC7941241/ /pubmed/33442944 http://dx.doi.org/10.1111/cpr.12988 Text en © 2021 The Authors. Cell Proliferation Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Wang, Zeyu
Su, Guanhua
Dai, Ziyu
Meng, Ming
Zhang, Hao
Fan, Fan
Liu, Zhengzheng
Zhang, Longbo
Weygant, Nathaniel
He, Fengqiong
Fang, Ning
Zhang, Liyang
Cheng, Quan
Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title_full Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title_fullStr Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title_full_unstemmed Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title_short Circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
title_sort circadian clock genes promote glioma progression by affecting tumour immune infiltration and tumour cell proliferation
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7941241/
https://www.ncbi.nlm.nih.gov/pubmed/33442944
http://dx.doi.org/10.1111/cpr.12988
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