Cargando…

Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework

OBJECTIVE: The most common histopathologic malignant and benign nodules are Adenocarcinoma and Granuloma, respectively, which have different standards of care. In this paper, we propose an automatic framework for the diagnosis of the Adenocarcinomas and the Granulomas in the CT scans of the chest fr...

Descripción completa

Detalles Bibliográficos
Autores principales: Tavakoli, Mahsa Bank, Orooji, Mahdi, Teimouri, Mehdi, Shahabifar, Ramita
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7942003/
https://www.ncbi.nlm.nih.gov/pubmed/33750438
http://dx.doi.org/10.1186/s13104-021-05502-1
_version_ 1783662230985768960
author Tavakoli, Mahsa Bank
Orooji, Mahdi
Teimouri, Mehdi
Shahabifar, Ramita
author_facet Tavakoli, Mahsa Bank
Orooji, Mahdi
Teimouri, Mehdi
Shahabifar, Ramita
author_sort Tavakoli, Mahsa Bank
collection PubMed
description OBJECTIVE: The most common histopathologic malignant and benign nodules are Adenocarcinoma and Granuloma, respectively, which have different standards of care. In this paper, we propose an automatic framework for the diagnosis of the Adenocarcinomas and the Granulomas in the CT scans of the chest from a private dataset. We use the radiomic features of the nodules and the attached vessel tortuosity for the diagnosis. The private dataset includes 22 CTs for each nodule type, i.e., adenocarcinoma and granuloma. The dataset contains the CTs of the non-smoker patients who are between 30 and 60 years old. To automatically segment the delineated nodule area and the attached vessels area, we apply a morphological-based approach. For distinguishing the malignancy of the segmented nodule, two texture features of the nodule, the curvature Mean and the number of the attached vessels are extracted. RESULTS: We compare our framework with the state-of-the-art feature selection methods for differentiating Adenocarcinomas from Granulomas. These methods employ only the shape features of the nodule, the texture features of the nodule, or the torsion features of the attached vessels along with the radiomic features of the nodule. The accuracy of our framework is improved by considering the four selected features. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05502-1.
format Online
Article
Text
id pubmed-7942003
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-79420032021-03-10 Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework Tavakoli, Mahsa Bank Orooji, Mahdi Teimouri, Mehdi Shahabifar, Ramita BMC Res Notes Research Note OBJECTIVE: The most common histopathologic malignant and benign nodules are Adenocarcinoma and Granuloma, respectively, which have different standards of care. In this paper, we propose an automatic framework for the diagnosis of the Adenocarcinomas and the Granulomas in the CT scans of the chest from a private dataset. We use the radiomic features of the nodules and the attached vessel tortuosity for the diagnosis. The private dataset includes 22 CTs for each nodule type, i.e., adenocarcinoma and granuloma. The dataset contains the CTs of the non-smoker patients who are between 30 and 60 years old. To automatically segment the delineated nodule area and the attached vessels area, we apply a morphological-based approach. For distinguishing the malignancy of the segmented nodule, two texture features of the nodule, the curvature Mean and the number of the attached vessels are extracted. RESULTS: We compare our framework with the state-of-the-art feature selection methods for differentiating Adenocarcinomas from Granulomas. These methods employ only the shape features of the nodule, the texture features of the nodule, or the torsion features of the attached vessels along with the radiomic features of the nodule. The accuracy of our framework is improved by considering the four selected features. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-021-05502-1. BioMed Central 2021-03-09 /pmc/articles/PMC7942003/ /pubmed/33750438 http://dx.doi.org/10.1186/s13104-021-05502-1 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Tavakoli, Mahsa Bank
Orooji, Mahdi
Teimouri, Mehdi
Shahabifar, Ramita
Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title_full Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title_fullStr Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title_full_unstemmed Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title_short Distinguishing Adenocarcinomas from Granulomas in the CT scan of the chest: performance degradation evaluation in the automatic segmentation framework
title_sort distinguishing adenocarcinomas from granulomas in the ct scan of the chest: performance degradation evaluation in the automatic segmentation framework
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7942003/
https://www.ncbi.nlm.nih.gov/pubmed/33750438
http://dx.doi.org/10.1186/s13104-021-05502-1
work_keys_str_mv AT tavakolimahsabank distinguishingadenocarcinomasfromgranulomasinthectscanofthechestperformancedegradationevaluationintheautomaticsegmentationframework
AT oroojimahdi distinguishingadenocarcinomasfromgranulomasinthectscanofthechestperformancedegradationevaluationintheautomaticsegmentationframework
AT teimourimehdi distinguishingadenocarcinomasfromgranulomasinthectscanofthechestperformancedegradationevaluationintheautomaticsegmentationframework
AT shahabifarramita distinguishingadenocarcinomasfromgranulomasinthectscanofthechestperformancedegradationevaluationintheautomaticsegmentationframework