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Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer

This study retrieved the transcriptome profiling data of 552 endometrial cancer (EC) patients from the TCGA (The Cancer Genome Atlas) database, and identified 1297 lncRNAs (long noncoding RNAs) related to autophagy genes using Pearson correlation analysis. Univariate Cox regression analysis of the t...

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Autores principales: Wang, Xiufang, Dai, Chenyang, Ye, Minqing, Wang, Jingyun, Lin, Weizhao, Li, Ruiman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7950257/
https://www.ncbi.nlm.nih.gov/pubmed/33534780
http://dx.doi.org/10.18632/aging.202431
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author Wang, Xiufang
Dai, Chenyang
Ye, Minqing
Wang, Jingyun
Lin, Weizhao
Li, Ruiman
author_facet Wang, Xiufang
Dai, Chenyang
Ye, Minqing
Wang, Jingyun
Lin, Weizhao
Li, Ruiman
author_sort Wang, Xiufang
collection PubMed
description This study retrieved the transcriptome profiling data of 552 endometrial cancer (EC) patients from the TCGA (The Cancer Genome Atlas) database, and identified 1297 lncRNAs (long noncoding RNAs) related to autophagy genes using Pearson correlation analysis. Univariate Cox regression analysis of the training data set revealed that 14 autophagy-related lncRNAs had significantly prognostic value for endometrial cancer (P < 0.01). Multivariate Cox regression analysis of these autophagy-related lncRNAs established the following autophagy-related lncRNA prognosis signature for endometrial cancer: PI = (0.255 × AC005229.4 expression) + (0.405 × BX322234.1 expression) + (0.169 × FIRRE expression value) + (–0.122 × RAB11B-AS1 expression) + (–0.338 × AC003102.1 expression). This signature was validated in both the testing data set and the entire data set. The areas under the receiver operating characteristics curves for the 1-, 3-, and 5-year overall survival rates in the entire data set were 0.772, 0.733, and 0.714, respectively. In addition, a gene set enrichment analysis confirmed that cancer-related and autophagy-related pathways were significantly up-regulated in the high-risk group. In summary, this study has demonstrated that a signature comprising five autophagy-related lncRNAs has potential as an independent prognostic indicator of endometrial cancer, and also that these lncRNAs may play a key role in the development of endometrial cancer.
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spelling pubmed-79502572021-03-23 Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer Wang, Xiufang Dai, Chenyang Ye, Minqing Wang, Jingyun Lin, Weizhao Li, Ruiman Aging (Albany NY) Research Paper This study retrieved the transcriptome profiling data of 552 endometrial cancer (EC) patients from the TCGA (The Cancer Genome Atlas) database, and identified 1297 lncRNAs (long noncoding RNAs) related to autophagy genes using Pearson correlation analysis. Univariate Cox regression analysis of the training data set revealed that 14 autophagy-related lncRNAs had significantly prognostic value for endometrial cancer (P < 0.01). Multivariate Cox regression analysis of these autophagy-related lncRNAs established the following autophagy-related lncRNA prognosis signature for endometrial cancer: PI = (0.255 × AC005229.4 expression) + (0.405 × BX322234.1 expression) + (0.169 × FIRRE expression value) + (–0.122 × RAB11B-AS1 expression) + (–0.338 × AC003102.1 expression). This signature was validated in both the testing data set and the entire data set. The areas under the receiver operating characteristics curves for the 1-, 3-, and 5-year overall survival rates in the entire data set were 0.772, 0.733, and 0.714, respectively. In addition, a gene set enrichment analysis confirmed that cancer-related and autophagy-related pathways were significantly up-regulated in the high-risk group. In summary, this study has demonstrated that a signature comprising five autophagy-related lncRNAs has potential as an independent prognostic indicator of endometrial cancer, and also that these lncRNAs may play a key role in the development of endometrial cancer. Impact Journals 2021-02-01 /pmc/articles/PMC7950257/ /pubmed/33534780 http://dx.doi.org/10.18632/aging.202431 Text en Copyright: © 2021 Wang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wang, Xiufang
Dai, Chenyang
Ye, Minqing
Wang, Jingyun
Lin, Weizhao
Li, Ruiman
Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title_full Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title_fullStr Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title_full_unstemmed Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title_short Prognostic value of an autophagy-related long-noncoding-RNA signature for endometrial cancer
title_sort prognostic value of an autophagy-related long-noncoding-rna signature for endometrial cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7950257/
https://www.ncbi.nlm.nih.gov/pubmed/33534780
http://dx.doi.org/10.18632/aging.202431
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