Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea

In 2019, diarrhea cases occurred on cattle farms in Qionglai and Guang'an, Sichuan Province. Two out of 20 (10%) serum and nasal swab samples were positive when tested using a bovine viral diarrhea virus (BVDV) antigen-capture ELISA kit. Two non-cytopathic strains of BVDV were isolated and name...

Descripción completa

Detalles Bibliográficos
Autores principales: Tian, Bin, Cai, Dongjie, Li, Weiqiang, Bu, Qinglong, Wang, Mingshu, Ye, Gang, Liu, Jianzhu, Wang, Ya, Gou, Liping, Yi, Jun, Zuo, Zhicai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Vienna 2021
Materias:
Annotated Sequence Record
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7952330/
https://www.ncbi.nlm.nih.gov/pubmed/33582856
http://dx.doi.org/10.1007/s00705-021-04990-7
_version_ 1783663705440911360
author Tian, Bin
Cai, Dongjie
Li, Weiqiang
Bu, Qinglong
Wang, Mingshu
Ye, Gang
Liu, Jianzhu
Wang, Ya
Gou, Liping
Yi, Jun
Zuo, Zhicai
author_facet Tian, Bin
Cai, Dongjie
Li, Weiqiang
Bu, Qinglong
Wang, Mingshu
Ye, Gang
Liu, Jianzhu
Wang, Ya
Gou, Liping
Yi, Jun
Zuo, Zhicai
author_sort Tian, Bin
collection PubMed
description In 2019, diarrhea cases occurred on cattle farms in Qionglai and Guang'an, Sichuan Province. Two out of 20 (10%) serum and nasal swab samples were positive when tested using a bovine viral diarrhea virus (BVDV) antigen-capture ELISA kit. Two non-cytopathic strains of BVDV were isolated and named QL1903 and GA190608, respectively. The nucleotide sequences of the genomes of the two isolates were 89.52% identical. Phylogenetic analysis based on the 5'-UTR sequence revealed that the BVDV isolate QL1903 belonged to BVDV subtype 1b, whereas isolate GA190608 clustered with strains HN1814, EN-19, and BJ09_26 in a separate branch, which has tentatively been classified as a new genetic subtype, "1v". SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-021-04990-7.
format Online
Article
Text
id pubmed-7952330
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer Vienna
record_format MEDLINE/PubMed
spelling pubmed-79523302021-03-28 Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea Tian, Bin Cai, Dongjie Li, Weiqiang Bu, Qinglong Wang, Mingshu Ye, Gang Liu, Jianzhu Wang, Ya Gou, Liping Yi, Jun Zuo, Zhicai Arch Virol Annotated Sequence Record In 2019, diarrhea cases occurred on cattle farms in Qionglai and Guang'an, Sichuan Province. Two out of 20 (10%) serum and nasal swab samples were positive when tested using a bovine viral diarrhea virus (BVDV) antigen-capture ELISA kit. Two non-cytopathic strains of BVDV were isolated and named QL1903 and GA190608, respectively. The nucleotide sequences of the genomes of the two isolates were 89.52% identical. Phylogenetic analysis based on the 5'-UTR sequence revealed that the BVDV isolate QL1903 belonged to BVDV subtype 1b, whereas isolate GA190608 clustered with strains HN1814, EN-19, and BJ09_26 in a separate branch, which has tentatively been classified as a new genetic subtype, "1v". SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00705-021-04990-7. Springer Vienna 2021-02-13 2021 /pmc/articles/PMC7952330/ /pubmed/33582856 http://dx.doi.org/10.1007/s00705-021-04990-7 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Annotated Sequence Record
Tian, Bin
Cai, Dongjie
Li, Weiqiang
Bu, Qinglong
Wang, Mingshu
Ye, Gang
Liu, Jianzhu
Wang, Ya
Gou, Liping
Yi, Jun
Zuo, Zhicai
Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title_full Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title_fullStr Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title_full_unstemmed Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title_short Identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
title_sort identification and genotyping of a new subtype of bovine viral diarrhea virus 1 isolated from cattle with diarrhea
topic Annotated Sequence Record
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7952330/
https://www.ncbi.nlm.nih.gov/pubmed/33582856
http://dx.doi.org/10.1007/s00705-021-04990-7
work_keys_str_mv AT tianbin identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT caidongjie identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT liweiqiang identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT buqinglong identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT wangmingshu identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT yegang identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT liujianzhu identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT wangya identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT gouliping identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT yijun identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea
AT zuozhicai identificationandgenotypingofanewsubtypeofbovineviraldiarrheavirus1isolatedfromcattlewithdiarrhea

Ejemplares similares