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Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist

Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed w...

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Autores principales: Yokoi, Taiyo, Nabe, Taku, Horoiwa, Shinri, Hayashi, Ken’ichiro, Ito-Harashima, Sayoko, Yagi, Takashi, Nakagawa, Yoshiaki, Miyagawa, Hisashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pesticide Science Society of Japan 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953028/
https://www.ncbi.nlm.nih.gov/pubmed/33746548
http://dx.doi.org/10.1584/jpestics.D20-074
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author Yokoi, Taiyo
Nabe, Taku
Horoiwa, Shinri
Hayashi, Ken’ichiro
Ito-Harashima, Sayoko
Yagi, Takashi
Nakagawa, Yoshiaki
Miyagawa, Hisashi
author_facet Yokoi, Taiyo
Nabe, Taku
Horoiwa, Shinri
Hayashi, Ken’ichiro
Ito-Harashima, Sayoko
Yagi, Takashi
Nakagawa, Yoshiaki
Miyagawa, Hisashi
author_sort Yokoi, Taiyo
collection PubMed
description Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed with three computational filters: (i) shape and chemical similarity as compared to known JH-active compounds; (ii) molecular docking simulations against a Drosophila JH receptor, methoprene-tolerant; and (iii) free energy calculation of ligand–receptor binding using a modified MM/PBSA (molecular mechanics/Poisson–Boltzmann surface area) protocol. The 11 candidates that passed the three filters were evaluated in a luciferase reporter assay, leading to the identification of a hit compound that contains a piperazine ring system (EC(50)=870 nM). This compound is structurally dissimilar to known JH agonists and synthetically easy to access; therefore, it is a promising starting point for further structure optimization.
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spelling pubmed-79530282021-03-18 Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist Yokoi, Taiyo Nabe, Taku Horoiwa, Shinri Hayashi, Ken’ichiro Ito-Harashima, Sayoko Yagi, Takashi Nakagawa, Yoshiaki Miyagawa, Hisashi J Pestic Sci Regular Article Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed with three computational filters: (i) shape and chemical similarity as compared to known JH-active compounds; (ii) molecular docking simulations against a Drosophila JH receptor, methoprene-tolerant; and (iii) free energy calculation of ligand–receptor binding using a modified MM/PBSA (molecular mechanics/Poisson–Boltzmann surface area) protocol. The 11 candidates that passed the three filters were evaluated in a luciferase reporter assay, leading to the identification of a hit compound that contains a piperazine ring system (EC(50)=870 nM). This compound is structurally dissimilar to known JH agonists and synthetically easy to access; therefore, it is a promising starting point for further structure optimization. Pesticide Science Society of Japan 2021-02-20 /pmc/articles/PMC7953028/ /pubmed/33746548 http://dx.doi.org/10.1584/jpestics.D20-074 Text en © 2021 Pesticide Science Society of Japan https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License.
spellingShingle Regular Article
Yokoi, Taiyo
Nabe, Taku
Horoiwa, Shinri
Hayashi, Ken’ichiro
Ito-Harashima, Sayoko
Yagi, Takashi
Nakagawa, Yoshiaki
Miyagawa, Hisashi
Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title_full Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title_fullStr Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title_full_unstemmed Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title_short Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
title_sort virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953028/
https://www.ncbi.nlm.nih.gov/pubmed/33746548
http://dx.doi.org/10.1584/jpestics.D20-074
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