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Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist
Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed w...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pesticide Science Society of Japan
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953028/ https://www.ncbi.nlm.nih.gov/pubmed/33746548 http://dx.doi.org/10.1584/jpestics.D20-074 |
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author | Yokoi, Taiyo Nabe, Taku Horoiwa, Shinri Hayashi, Ken’ichiro Ito-Harashima, Sayoko Yagi, Takashi Nakagawa, Yoshiaki Miyagawa, Hisashi |
author_facet | Yokoi, Taiyo Nabe, Taku Horoiwa, Shinri Hayashi, Ken’ichiro Ito-Harashima, Sayoko Yagi, Takashi Nakagawa, Yoshiaki Miyagawa, Hisashi |
author_sort | Yokoi, Taiyo |
collection | PubMed |
description | Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed with three computational filters: (i) shape and chemical similarity as compared to known JH-active compounds; (ii) molecular docking simulations against a Drosophila JH receptor, methoprene-tolerant; and (iii) free energy calculation of ligand–receptor binding using a modified MM/PBSA (molecular mechanics/Poisson–Boltzmann surface area) protocol. The 11 candidates that passed the three filters were evaluated in a luciferase reporter assay, leading to the identification of a hit compound that contains a piperazine ring system (EC(50)=870 nM). This compound is structurally dissimilar to known JH agonists and synthetically easy to access; therefore, it is a promising starting point for further structure optimization. |
format | Online Article Text |
id | pubmed-7953028 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Pesticide Science Society of Japan |
record_format | MEDLINE/PubMed |
spelling | pubmed-79530282021-03-18 Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist Yokoi, Taiyo Nabe, Taku Horoiwa, Shinri Hayashi, Ken’ichiro Ito-Harashima, Sayoko Yagi, Takashi Nakagawa, Yoshiaki Miyagawa, Hisashi J Pestic Sci Regular Article Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed with three computational filters: (i) shape and chemical similarity as compared to known JH-active compounds; (ii) molecular docking simulations against a Drosophila JH receptor, methoprene-tolerant; and (iii) free energy calculation of ligand–receptor binding using a modified MM/PBSA (molecular mechanics/Poisson–Boltzmann surface area) protocol. The 11 candidates that passed the three filters were evaluated in a luciferase reporter assay, leading to the identification of a hit compound that contains a piperazine ring system (EC(50)=870 nM). This compound is structurally dissimilar to known JH agonists and synthetically easy to access; therefore, it is a promising starting point for further structure optimization. Pesticide Science Society of Japan 2021-02-20 /pmc/articles/PMC7953028/ /pubmed/33746548 http://dx.doi.org/10.1584/jpestics.D20-074 Text en © 2021 Pesticide Science Society of Japan https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License. |
spellingShingle | Regular Article Yokoi, Taiyo Nabe, Taku Horoiwa, Shinri Hayashi, Ken’ichiro Ito-Harashima, Sayoko Yagi, Takashi Nakagawa, Yoshiaki Miyagawa, Hisashi Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title | Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title_full | Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title_fullStr | Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title_full_unstemmed | Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title_short | Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
title_sort | virtual screening identifies a novel piperazine-based insect juvenile hormone agonist |
topic | Regular Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953028/ https://www.ncbi.nlm.nih.gov/pubmed/33746548 http://dx.doi.org/10.1584/jpestics.D20-074 |
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