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A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses
To enhance reproducibility in scientific research, more and more datasets are becoming publicly available so that researchers can perform secondary analyses to investigate questions the original scientists had not posited. This increases the return on investment for the NIH and other funding bodies....
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Oxford University Press
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953484/ https://www.ncbi.nlm.nih.gov/pubmed/33710326 http://dx.doi.org/10.1093/gigascience/giab015 |
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author | Raman, Ayush T |
author_facet | Raman, Ayush T |
author_sort | Raman, Ayush T |
collection | PubMed |
description | To enhance reproducibility in scientific research, more and more datasets are becoming publicly available so that researchers can perform secondary analyses to investigate questions the original scientists had not posited. This increases the return on investment for the NIH and other funding bodies. These datasets, however, are not perfect, and a better understanding of the assumptions that shaped them is required. The 2020 Junior Research Parasite Award recognized our work that showed that the signal-to-noise ratio in a particular dataset had not been investigated, leading to an erroneous conclusion in the original research. In this commentary, I share the process that led to the identification of the problem and hopefully provide useful lessons for other research parasites. |
format | Online Article Text |
id | pubmed-7953484 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-79534842021-03-17 A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses Raman, Ayush T Gigascience Commentary To enhance reproducibility in scientific research, more and more datasets are becoming publicly available so that researchers can perform secondary analyses to investigate questions the original scientists had not posited. This increases the return on investment for the NIH and other funding bodies. These datasets, however, are not perfect, and a better understanding of the assumptions that shaped them is required. The 2020 Junior Research Parasite Award recognized our work that showed that the signal-to-noise ratio in a particular dataset had not been investigated, leading to an erroneous conclusion in the original research. In this commentary, I share the process that led to the identification of the problem and hopefully provide useful lessons for other research parasites. Oxford University Press 2021-03-12 /pmc/articles/PMC7953484/ /pubmed/33710326 http://dx.doi.org/10.1093/gigascience/giab015 Text en © The Author(s) 2021. Published by Oxford University Press GigaScience. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Commentary Raman, Ayush T A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title | A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title_full | A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title_fullStr | A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title_full_unstemmed | A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title_short | A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
title_sort | research parasite's perspective on establishing a baseline to avoid errors in secondary analyses |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7953484/ https://www.ncbi.nlm.nih.gov/pubmed/33710326 http://dx.doi.org/10.1093/gigascience/giab015 |
work_keys_str_mv | AT ramanayusht aresearchparasitesperspectiveonestablishingabaselinetoavoiderrorsinsecondaryanalyses AT ramanayusht researchparasitesperspectiveonestablishingabaselinetoavoiderrorsinsecondaryanalyses |