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Research on multi-path dense networks for MRI spinal segmentation
Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954354/ https://www.ncbi.nlm.nih.gov/pubmed/33711080 http://dx.doi.org/10.1371/journal.pone.0248303 |
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author | Liang, ShuFen Liu, Huilin Chen, Chen Qin, Chuanbo Yang, FangChen Feng, Yue Lin, Zhuosheng |
author_facet | Liang, ShuFen Liu, Huilin Chen, Chen Qin, Chuanbo Yang, FangChen Feng, Yue Lin, Zhuosheng |
author_sort | Liang, ShuFen |
collection | PubMed |
description | Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed information. To address these problems, this study proposes a series of improved models for semantic segmentation and progressively optimizes them from the three aspects of convolution module, codec unit, and feature fusion. Instead of the standard convolution structure, we apply a new type of convolution module for the feature extraction. The networks integrate a multi-path method to obtain richer-detail edge information. Finally, a dense network is utilized to strengthen the ability of the feature fusion and integrate more different-level information. The evaluation of the Accuracy, Dice coefficient, and Jaccard index led to values of 0.9855, 0.9185, and 0.8507, respectively. These metrics of the best network increased by 1.0%, 4.0%, and 6.1%, respectively. Boundary F1-Score reached 0.9124 indicating that the proposed networks can segment smaller targets to obtain smoother edges. Our methods obtain more key information than traditional methods and achieve superiority in segmentation performance. |
format | Online Article Text |
id | pubmed-7954354 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-79543542021-03-22 Research on multi-path dense networks for MRI spinal segmentation Liang, ShuFen Liu, Huilin Chen, Chen Qin, Chuanbo Yang, FangChen Feng, Yue Lin, Zhuosheng PLoS One Research Article Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed information. To address these problems, this study proposes a series of improved models for semantic segmentation and progressively optimizes them from the three aspects of convolution module, codec unit, and feature fusion. Instead of the standard convolution structure, we apply a new type of convolution module for the feature extraction. The networks integrate a multi-path method to obtain richer-detail edge information. Finally, a dense network is utilized to strengthen the ability of the feature fusion and integrate more different-level information. The evaluation of the Accuracy, Dice coefficient, and Jaccard index led to values of 0.9855, 0.9185, and 0.8507, respectively. These metrics of the best network increased by 1.0%, 4.0%, and 6.1%, respectively. Boundary F1-Score reached 0.9124 indicating that the proposed networks can segment smaller targets to obtain smoother edges. Our methods obtain more key information than traditional methods and achieve superiority in segmentation performance. Public Library of Science 2021-03-12 /pmc/articles/PMC7954354/ /pubmed/33711080 http://dx.doi.org/10.1371/journal.pone.0248303 Text en © 2021 Liang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Liang, ShuFen Liu, Huilin Chen, Chen Qin, Chuanbo Yang, FangChen Feng, Yue Lin, Zhuosheng Research on multi-path dense networks for MRI spinal segmentation |
title | Research on multi-path dense networks for MRI spinal segmentation |
title_full | Research on multi-path dense networks for MRI spinal segmentation |
title_fullStr | Research on multi-path dense networks for MRI spinal segmentation |
title_full_unstemmed | Research on multi-path dense networks for MRI spinal segmentation |
title_short | Research on multi-path dense networks for MRI spinal segmentation |
title_sort | research on multi-path dense networks for mri spinal segmentation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954354/ https://www.ncbi.nlm.nih.gov/pubmed/33711080 http://dx.doi.org/10.1371/journal.pone.0248303 |
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