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Research on multi-path dense networks for MRI spinal segmentation

Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed...

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Autores principales: Liang, ShuFen, Liu, Huilin, Chen, Chen, Qin, Chuanbo, Yang, FangChen, Feng, Yue, Lin, Zhuosheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954354/
https://www.ncbi.nlm.nih.gov/pubmed/33711080
http://dx.doi.org/10.1371/journal.pone.0248303
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author Liang, ShuFen
Liu, Huilin
Chen, Chen
Qin, Chuanbo
Yang, FangChen
Feng, Yue
Lin, Zhuosheng
author_facet Liang, ShuFen
Liu, Huilin
Chen, Chen
Qin, Chuanbo
Yang, FangChen
Feng, Yue
Lin, Zhuosheng
author_sort Liang, ShuFen
collection PubMed
description Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed information. To address these problems, this study proposes a series of improved models for semantic segmentation and progressively optimizes them from the three aspects of convolution module, codec unit, and feature fusion. Instead of the standard convolution structure, we apply a new type of convolution module for the feature extraction. The networks integrate a multi-path method to obtain richer-detail edge information. Finally, a dense network is utilized to strengthen the ability of the feature fusion and integrate more different-level information. The evaluation of the Accuracy, Dice coefficient, and Jaccard index led to values of 0.9855, 0.9185, and 0.8507, respectively. These metrics of the best network increased by 1.0%, 4.0%, and 6.1%, respectively. Boundary F1-Score reached 0.9124 indicating that the proposed networks can segment smaller targets to obtain smoother edges. Our methods obtain more key information than traditional methods and achieve superiority in segmentation performance.
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spelling pubmed-79543542021-03-22 Research on multi-path dense networks for MRI spinal segmentation Liang, ShuFen Liu, Huilin Chen, Chen Qin, Chuanbo Yang, FangChen Feng, Yue Lin, Zhuosheng PLoS One Research Article Accurate and robust segmentation of anatomical structures from magnetic resonance images is valuable in many computer-aided clinical tasks. Traditional codec networks are not satisfactory because of their low accuracy of edge segmentation, the low recognition rate of the target, and loss of detailed information. To address these problems, this study proposes a series of improved models for semantic segmentation and progressively optimizes them from the three aspects of convolution module, codec unit, and feature fusion. Instead of the standard convolution structure, we apply a new type of convolution module for the feature extraction. The networks integrate a multi-path method to obtain richer-detail edge information. Finally, a dense network is utilized to strengthen the ability of the feature fusion and integrate more different-level information. The evaluation of the Accuracy, Dice coefficient, and Jaccard index led to values of 0.9855, 0.9185, and 0.8507, respectively. These metrics of the best network increased by 1.0%, 4.0%, and 6.1%, respectively. Boundary F1-Score reached 0.9124 indicating that the proposed networks can segment smaller targets to obtain smoother edges. Our methods obtain more key information than traditional methods and achieve superiority in segmentation performance. Public Library of Science 2021-03-12 /pmc/articles/PMC7954354/ /pubmed/33711080 http://dx.doi.org/10.1371/journal.pone.0248303 Text en © 2021 Liang et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Liang, ShuFen
Liu, Huilin
Chen, Chen
Qin, Chuanbo
Yang, FangChen
Feng, Yue
Lin, Zhuosheng
Research on multi-path dense networks for MRI spinal segmentation
title Research on multi-path dense networks for MRI spinal segmentation
title_full Research on multi-path dense networks for MRI spinal segmentation
title_fullStr Research on multi-path dense networks for MRI spinal segmentation
title_full_unstemmed Research on multi-path dense networks for MRI spinal segmentation
title_short Research on multi-path dense networks for MRI spinal segmentation
title_sort research on multi-path dense networks for mri spinal segmentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954354/
https://www.ncbi.nlm.nih.gov/pubmed/33711080
http://dx.doi.org/10.1371/journal.pone.0248303
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