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Chloroplast genome of Gaura parviflora Douglas and its comparative analysis
Gaura parviflora Douglas (Onagraceae) is an annual or perennial herbaceous plant from the prairie of North America. It has become a harmful exotic invading plant in China due to its strong adaptability, fast growth, massive propagation and reproduction. The complete chloroplast (cp) genome of G. par...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954412/ https://www.ncbi.nlm.nih.gov/pubmed/33763571 http://dx.doi.org/10.1080/23802359.2021.1878960 |
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author | Zhang, Bin Wu, Ruige Liu, Meng Cai, Xiaoran Cheng, Yueqin |
author_facet | Zhang, Bin Wu, Ruige Liu, Meng Cai, Xiaoran Cheng, Yueqin |
author_sort | Zhang, Bin |
collection | PubMed |
description | Gaura parviflora Douglas (Onagraceae) is an annual or perennial herbaceous plant from the prairie of North America. It has become a harmful exotic invading plant in China due to its strong adaptability, fast growth, massive propagation and reproduction. The complete chloroplast (cp) genome of G. parviflora was reported in this study. The size of the complete cp genome of G. parviflora is 161,318 bp in length, including a pair of inverted repeat (IR) regions of 27,402 bp, a large single-copy (LSC) region of 89,132 bp, and a small single-copy (SSC) region of 17,382 bp. A total of 130 genes were annotated, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Comparison of cp genomes of four species from Onagraceae indicated that Onagraceae cp genomes had high nucleotide diversity. In addition, a few highly variable regions of these cp genomes were also detected. The phylogenetic tree showed that G. parviflora is closely related to Oenothera. Thus, the chloroplast genome of G. parviflora can provide valuable genetic information for species identification and phylogenetic analysis. |
format | Online Article Text |
id | pubmed-7954412 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-79544122021-03-23 Chloroplast genome of Gaura parviflora Douglas and its comparative analysis Zhang, Bin Wu, Ruige Liu, Meng Cai, Xiaoran Cheng, Yueqin Mitochondrial DNA B Resour Mitogenome Announcements Gaura parviflora Douglas (Onagraceae) is an annual or perennial herbaceous plant from the prairie of North America. It has become a harmful exotic invading plant in China due to its strong adaptability, fast growth, massive propagation and reproduction. The complete chloroplast (cp) genome of G. parviflora was reported in this study. The size of the complete cp genome of G. parviflora is 161,318 bp in length, including a pair of inverted repeat (IR) regions of 27,402 bp, a large single-copy (LSC) region of 89,132 bp, and a small single-copy (SSC) region of 17,382 bp. A total of 130 genes were annotated, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Comparison of cp genomes of four species from Onagraceae indicated that Onagraceae cp genomes had high nucleotide diversity. In addition, a few highly variable regions of these cp genomes were also detected. The phylogenetic tree showed that G. parviflora is closely related to Oenothera. Thus, the chloroplast genome of G. parviflora can provide valuable genetic information for species identification and phylogenetic analysis. Taylor & Francis 2021-03-11 /pmc/articles/PMC7954412/ /pubmed/33763571 http://dx.doi.org/10.1080/23802359.2021.1878960 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcements Zhang, Bin Wu, Ruige Liu, Meng Cai, Xiaoran Cheng, Yueqin Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title | Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title_full | Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title_fullStr | Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title_full_unstemmed | Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title_short | Chloroplast genome of Gaura parviflora Douglas and its comparative analysis |
title_sort | chloroplast genome of gaura parviflora douglas and its comparative analysis |
topic | Mitogenome Announcements |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954412/ https://www.ncbi.nlm.nih.gov/pubmed/33763571 http://dx.doi.org/10.1080/23802359.2021.1878960 |
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