The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)

Ilex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 15...

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Autores principales: Chong, Xinran, Li, Yunlong, Zhou, Yanwei, Chen, Hong, Li, Xinzhi, Li, Naiwei, Lu, Xiaoqing, Zhang, Fan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954430/
https://www.ncbi.nlm.nih.gov/pubmed/33763582
http://dx.doi.org/10.1080/23802359.2021.1882904
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author Chong, Xinran
Li, Yunlong
Zhou, Yanwei
Chen, Hong
Li, Xinzhi
Li, Naiwei
Lu, Xiaoqing
Zhang, Fan
author_facet Chong, Xinran
Li, Yunlong
Zhou, Yanwei
Chen, Hong
Li, Xinzhi
Li, Naiwei
Lu, Xiaoqing
Zhang, Fan
author_sort Chong, Xinran
collection PubMed
description Ilex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 157,538 bp, which contained a large single-copy (LSC) region of 87,055 bp and a small single-copy (SSC) region of 18,429 bp, and a pair of inverted repeats (IR) of 52,054 bp. A total of 137 genes, including 90 protein-coding genes, eight rRNAs, and 39 tRNAs, were identified. Phylogenetic analysis based on 74 conserved protein-coding genes revealed that I. Koehneana is closely related to I. ‘tall boy’.
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spelling pubmed-79544302021-03-23 The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) Chong, Xinran Li, Yunlong Zhou, Yanwei Chen, Hong Li, Xinzhi Li, Naiwei Lu, Xiaoqing Zhang, Fan Mitochondrial DNA B Resour Mitogenome Announcement Ilex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 157,538 bp, which contained a large single-copy (LSC) region of 87,055 bp and a small single-copy (SSC) region of 18,429 bp, and a pair of inverted repeats (IR) of 52,054 bp. A total of 137 genes, including 90 protein-coding genes, eight rRNAs, and 39 tRNAs, were identified. Phylogenetic analysis based on 74 conserved protein-coding genes revealed that I. Koehneana is closely related to I. ‘tall boy’. Taylor & Francis 2021-03-11 /pmc/articles/PMC7954430/ /pubmed/33763582 http://dx.doi.org/10.1080/23802359.2021.1882904 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Chong, Xinran
Li, Yunlong
Zhou, Yanwei
Chen, Hong
Li, Xinzhi
Li, Naiwei
Lu, Xiaoqing
Zhang, Fan
The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title_full The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title_fullStr The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title_full_unstemmed The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title_short The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
title_sort complete chloroplast genome sequence and phylogenetic analysis of ilex × koehneana ‘wirt l. winn’ (aquifoliaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7954430/
https://www.ncbi.nlm.nih.gov/pubmed/33763582
http://dx.doi.org/10.1080/23802359.2021.1882904
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